RNA id: XM_034306844.1


Basic Information

Item Value
RNA id XM_034306844.1
length 4539
RNA type mRNA
GC content 0.54
exon number 21
gene id sin3b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1700988 ~ 1726361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGCGAGCGCCCTCCCTCCCCTTTCACCCGCGCGCTCAGCTGCGGCCagatttaaagagacagtcacgGCTAGCTGCTAGTTTCTGCAATAAtcctaataataatttaaaaacagtaaTAGTCTTCATGATAATGATTTCGCACCCGGAAATCTAGTTCAGTTATCTTTCGTGTTggcttgtttgtgtgtagttAGAGCGGGTTTTTAAAGAGAAACGCAGCGATGCTTGTGTAGTTGAGTTGTGCTAGTTTTGTGCTGCCACTTGGCcaagatttttctttctttctttccttatttatttattttttttcgcTCAGATATCTGGTACAGCAGAGATTCAAAAAGTGACCACGCAAAACTAGACTGATCTGGGTTTGATTTTGGTGGATCTGTCTCTCCtccacacacagaaaaagagagaaagagagagagagagagggagttaaacagataaaataatcCGGGTTTGGTGTTTTGGTGGCTGCTGCTCTGAGCACAATGGCGAAAATTCAGGCTCACAGCAGCACCAAGCACATCAACCAGCTCCAGGACAAAGCCTTCAGCGCCCAGAAACACCAGCAGCACTTCCAGAAACTGAAGGTAGAAGATGCGTTATCGTACCTGGATCAGGTTAAAATCCGGTTTGCGAACGATCCCGGGATATACAACAAGTTCCTGGACATCATGAAGGAGTTTAAGTCTCAGAGTATCGATACGCCAGGCGTAATAAACCGCGTGTCTCAGCTGTTCCACGGCCACCCGGACCTCGTGCTGGGCTTCAACGCCTTCCTGCCTCCCGGATATCGGATAGAAATCCCGAAAAACGGAATGGCCTTCCTGCAGTCGCCTTTCAGTCCGCAGCAGGTTTCTCCCGGTAAAGCGAAGAGCGCCGAGTCGAGTTCAGCTCAGAGCGAGACGGTCGCGTCGCCTCAGAGCTCCTCGCCGTCATCGGGAGTCCCGCCGGAACCGCCCGGAAGACTTGCTCTGCCCCTGCCGAGCCAATCGCAGCCCGCCACGTCGTCGGCGTCCCCGCCTGCCTCGGAAGCGAGTCCCGTCGAGTTCGACAGCGCCATCAGCTACGTGAACAAGATCAAGAGCCGGTTCTTGGACCATCCGGAAATCTACAGGTCCTTCCTGGAAATCCTGCACACCTACCAGaagGAGCAGCTGGAGCTGAAGGAGAACAGGAGCAGGACGAATACGGGGATGACGGAGGACGAGGTTTTTTCCAAAGTGGCGAGTCTGTTTAAAGGACAGGAGGACCTGCTGGCGGAGTTCGGACAGTTCCTCCCCGACGCCAAGAGATCGCTGtttaCTAGCGGCTCTTTAACAGGCAAGGAGCAGGTGAAGAAGACGGACGAGGAGGAGTTAAACAAGCAGGGCAAGaaaaggccacgcccacttctacTGCCTCACATGACGCCGCTGCTTAAGAAGAAAATGAAGTTCTCCTGCTCCAAAGACCAGTCTTTCGCGTCAGTTGGGAAGCACGGAGTTCTCCGCGAGTTCACGTTCTTTGATAAGGTTCGGCGTTTGTTTAAGAGTCAGGAGGTGTACGAGAACTTCCTGCGCTGCATCGCCCTGTTTAACCAGGAGGTGGTGTCGGGAGCTGAGCTCCTGCAGCTCGTCACGCCGTTCCTCGGGAAGTTTCCAGAGCTGTACACCCAGTTTAAGTCGTTCCTCGGTGAGAAGGAGCTGTCACACTCTGTATCCGGCCTATCAGAGCGCTACATGGAAGGGGGTGGAGCCAGAGAGGTGGACTACGCCTCCTGTAAGAGACTTGGTTCGAGTTACAGAGCCTTGCCAAAAACGTACCAACAACCCAAGTGCAGCGGGAGAACGGCACTGTGTaaagagGTGTTGAACGATACCTGGGTGTCCTTCCCGTCGTGGTCGGAGGACTCCACGTTCGTGAGCTCGAAGAAGACGCCGTACGAGGAGCAGCTACACCGCTGCGAGGACGAGAGGTTCGAGCTGGACGTGGTTCTGGAGACCAACCTGGCCACCATCAGGGTTCTGGAGAGCGTGCAGAAGAAGCTGTCTCGCCTCTCGCCGGAGGACCAGGACCGCTTCCGATTGGACGATTGTCTGGGCGGGACCTCGGAGGTGATCCAGCGGCGTGCCGTGTACCGCATTTACGGAGATAAAGCTCCCGAGATCATCGAGGGACTGAAGAGGAACCCGGCGACTGCCGTACCTGTAGTACTGAAGAGGTTGAAGGCGAAGGAGGAGGAGTGGAGAGAAGCTCAGCAGGGCTTTAATAAGATCTGGAGGGAGCAGTATGAGAAAGCTTACCTCAAATCTCTGGACCACCAGGGAGTCAATTTCAAACAGAACGACATGAAGGCGCTGAGGTCCAAAAGCCTGCTGAATGAGATCGAGAGCATCTACGACGAgcgtcaGGAGCAGAGCACAGAGGAGGGCGGAGTCGGTCAGCAGAGTCGTGAAGGGGGCGGAGCCTCTAGCGAACCTCACCTGATCTTCTCCTACGAGGACAAGCAGATCCTGGAGGACGCCGCGTCCCTCATCATCTATCACGTGAAGCGTCAGCCCACCATCCACAAGGAGGACAAGGACCAGATCAAGCGCATCATCCACCACTTCATCCCCGACCTGTTCTTCTCCCGGCGCGGTGAGCTCAGCGACACAGAGGAGTGGACGGACGAGGAGGCTGAGACGGAGGACGGGGGCGGAGCTGCGGCCGGGgaggaggaggagccgGCGGCAGGAGCAGGGCCTCCAGGGAGTCAGCAGCAGGTGAACGGCGAGTCGAGGCGGCGGCGGTGTGCGTCCCCGCGTGGGGCGGAGCAACAGGAGCAGCTGGAGCAGCAGAAGGAGCAGGACGGCATCTACAACCTGTTCTTCGTCAACAATAACTGGTACTTCTTCCTGCGGCTGCACCAGACTCTGTGCTCGCGGCTGCTGAAGGTGTACCGACAGGCCGAGAGACAGCTGCTGGAGCACCGCGCCGAACAGAGCGCAGAGCGCCTCCTGTTGGCTGAGGGACGCCGAGACAAGGCCACTGATCTCGCCATGGAGCTGCGACTCAAACAACCCagcgAGGTGGAGCTGGAGGAGTATTACCCGGCGTTTTTGGACATGGTACGCAGTCTTCTGGACGGAAATCTGGAGTCGACGCAGTACGAGGACACGCTGCGTGAGATGTTCACCATCCACGCCTACATCGGCTTCACCATCGACAAACTCATCCAGAACATCGtcagacagcacctGGTGAGTGATgaggtgtgtgttcaggtagctgagctgtatgtgtgtgagcgtAGACGGGGCGCAGGGGGAAATCTCTCCTCTCAGTGTGTGAGAGCCGCCTGGGAGACCAGCTACCAGTGGAAGGCTGAGAGAGTGATGGCCGAGGAGAACTGCTttaagGTGATGTTTATTCAGAATAAAGGTGAAGTGACGATGACCATCGAGCTGCTGGACACTGAGGAGGCTCAGGCTGATGATCCACTCGAAGTACagTGCCTGTCCAGCTACATGGAGCAGTTTGTTGGAACCGAAACATCCACGTGTTCACAGGGAGAAGGTTACTACTTCAAACCTGTATTCCTGCCCagGAACCTGCGTCAGTTCCGGCGCTGGCAGCTGCGGCAGGTGGAGGCTCTGCGCAGTCGGCGTGAGCTGCGGGATCAGCTGGGTGTGGAAAGCGCCGGAAACCTCGACTGCAGGTTTAAACTCAACACGCACAAGATGGTGTTCGTCATGAACTCAGAGGATTACATGTACCGCCGCGGTGCGCTGATCAAGGCCAGGAAGactcacTTGCGCGTGTCCCGGCTGCAGCGTGAGCGTTTCTCCCGTTGGCACGGGGCGTGGCAGAGCGAGCACGTCCCCCCCGCCGCCGCCCGCTCCGTCCACGCCTGGCTCCTCGGAGACGACCTCGACGACCTGCTGCCCTGCAAGACCACCTGCGTGACttcacaggtcaaaggtcaaactgTCAACAGGTACCAGGTGCGGTACAGCAGCAAGGACCCGGCTTCACCGTGACGCACAtcgccacacccccttcacccaacgcgcacacacacacacacacacatgcacacacacacacacacacacacacagaaggacaGATGCAGCGTCGATGATGTAATCATGGTGTGGACTTGAACAGCCAATCCGatgtgaatgaaagaatgactattttttttccccattgtaGTTTTTAGCATATGAAACCagccttttgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcacttctcTCGACTGTAAGTGAATGAGTGATGTCATCGGCCGGTGAACGCTGGAGACTTGGCGCGTTAATGCTTATCATCTGAATCATCATGTACCATATCGACTCTCGCCAAatcatgctttttcttttttgtttttttttttgttttgttttgtttggtgtaATTTTTACATGTTAAAAACATGAGATGATGAAATACAAGCGTTTTGCAGAGGAATGTATAACATGGATCCTGTATCAGTTatcttgaaataaaacaaccacGTTGTGCAGTTCTTAcaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K23213 SIN3B; paired amphipathic helix protein Sin3b

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147893 lncRNA upstream 4727 1686319 ~ 1696261 (+) True G125119
TU147886 lncRNA upstream 77983 1621257 ~ 1623005 (+) True G125117
TU147885 lncRNA upstream 82118 1617620 ~ 1618870 (+) True G125116
TU147866 lncRNA upstream 108095 1543836 ~ 1592893 (+) False G125098
TU147909 lncRNA downstream 35943 1762304 ~ 1763325 (+) False G125129
TU147910 lncRNA downstream 35943 1762304 ~ 1763325 (+) True G125129
TU147928 lncRNA downstream 84993 1811354 ~ 1813285 (+) True G125144
TU148000 lncRNA downstream 234243 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA downstream 240305 1966666 ~ 1987569 (+) False LOC113535242
XM_034306566.1 mRNA upstream 7135 1628078 ~ 1693853 (+) True xpr1a
XM_034306820.1 mRNA upstream 120261 1562749 ~ 1580727 (+) True lhx4
XM_034306746.1 mRNA upstream 162134 1515223 ~ 1538854 (+) True qsox1
XM_034306742.1 mRNA upstream 199599 1475101 ~ 1501389 (+) False cep350
XM_034306302.1 mRNA downstream 447 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA downstream 498 1726859 ~ 1753281 (+) False def6a
XM_026928023.2 mRNA downstream 29164 1755525 ~ 1759336 (+) True ndufb11
XM_026928020.2 mRNA downstream 33627 1759988 ~ 1765042 (+) True rhoaa
XM_026927979.2 mRNA downstream 49295 1775656 ~ 1784092 (+) True si:dkey-6n6.1
TU147818 other upstream 354403 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 594701 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 884331 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 77136 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 150680 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 489741 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2368908 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2494323 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile