RNA id: XM_034306907.1


Basic Information

Item Value
RNA id XM_034306907.1
length 719
RNA type mRNA
GC content 0.63
exon number 4
gene id LOC113546086
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29930249 ~ 29932961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGATTCTGAAGGGACCGCTCTCGCCTCGGGGCCCTCAGACCCACGGGCCCGCTCGACCTGCTATTGATTGTGCTCAGGgtcagaaaaagaaaGAGTCGGGCGCTACTGGGAAGCGGGGACAGTGCGGGCAGCTCACCGCGCCGTGGACCGACACCGAGGTCACCTCACTGTCCGGAGACTGGGGCCTCATGTACCGCCTGAAAGTGTTACCCATGTCTAAGGATGGACCGCATCGCCTGGTTTTCCCGGAGCAGCCGCTGTTCCGCTTCATTAGGCGGGTGTACAGGTGCTGTCAGATGGGCCACCACTGCCGAGGAGTTAAAGGCCTCCAGGGCCGGGAGACTGCAGGCTCCACGGTCGAGTTTGTGCTGAGCGAGGACGTGTGGTCAGCGCCGATACTGAGAGCCGAGGTTCATCTTCACATCTCCAGCCCACAGCCGCTGAACGTCCAGCCGCTGCTGCCCTGGCTCGAGAAACGCCACCTTCCTACGAGATACAGTGTGTGGTGGAAGGACGGCATGCTGGAGGTCAGGGTGGATCTGCTCTTCCTCTTCCAGGCTCTTCAGGCTCTCCGAGCGAAGCGTGGAGGCTCCAGCGTGATGGAGATCCGGCGTGTCGGAGGTCTGCACGCACTCCGGCTTCGGAAGCGAGACCCACTGAGGCGCAGGGTGGAGACGGGAGGGCGGAGCGCCCCCTGCAGGTTCCTGTAGAGCTGGGC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko04919 Thyroid hormone signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 425377 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 508955 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 578493 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 632452 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 683933 29239482 ~ 29246316 (+) True G140884
TU166944 lncRNA downstream 4547 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 16897 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 18804 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 31806 29964767 ~ 30022919 (+) True G141236
TU166931 lncRNA downstream 38442 29971403 ~ 30022919 (+) False G141236
XM_034306906.1 mRNA upstream 1179 29903513 ~ 29929070 (+) True LOC113546064
XM_034306694.1 mRNA upstream 19297 29909977 ~ 29910952 (+) True LOC117597833
XM_026945800.2 mRNA upstream 27006 29899457 ~ 29903243 (+) True LOC113546087
XM_034306781.1 mRNA upstream 42894 29878359 ~ 29887355 (+) False prkab1b
XM_034306783.1 mRNA upstream 42894 29878376 ~ 29887355 (+) True prkab1b
XM_034306693.1 mRNA downstream 5 29932966 ~ 29946606 (+) True hnf1a
XM_034306392.1 mRNA downstream 95900 30028861 ~ 30040856 (+) True ggt5a
XM_026945859.2 mRNA downstream 177836 30110797 ~ 30131740 (+) True lrrc75ba
XM_034306882.1 mRNA downstream 200975 30133936 ~ 30160538 (+) False LOC113546114
XM_034306884.1 mRNA downstream 200975 30133936 ~ 30160538 (+) False LOC113546114
TU166924 other upstream 1095 29910029 ~ 29929154 (+) True G141234
TU166932 other upstream 3514 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other upstream 3514 29908415 ~ 29926735 (+) False LOC113546064
TU166920 other upstream 3780 29925577 ~ 29926469 (+) False LOC113546064
TU166919 other upstream 6043 29903528 ~ 29924206 (+) False LOC113546064

Expression Profile