RNA id: XM_034306928.1


Basic Information

Item Value
RNA id XM_034306928.1
length 4896
RNA type mRNA
GC content 0.45
exon number 10
gene id gfra2a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29624140 ~ 29696031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacaccccagccCTCCATCCTGCGCGCGCGCCTCTGGAGCAGAGTTGCAGGCGCGGCGACCTCTTTGATGTGACGGTGTTTGGAGCGCGCGCGCGGGGCATGTCCTGTCCTCTCCTCCGGATCGCGGCTCTTCATCAGCGGCATGTTGGGAAAGATGAGCGGCGGATCCCGGGATTCActgcttcctcttcctcttcctcttcctcttaaacaggaataaaaattaaaataaataaataaaaagagagcaAACTTTACATCTTTACGGATTTATTACACCGGATCCTGATGATGatcctgatgatgatgatgatgaagatgatgatgatgatgaggaagggTCCGCGCGCGCTGGAAGCTGTTCGGgatttgtaacattttttagCGCAGTTTCCGGGTTTGGGAATTAAAAAGATAGTAAAGAAAAAATTAGTGTGTCTGAGATTCAGCTCGCGCTTCCATCATGCGTCTGTATCTGTGCAGCTTCCTGCTCCTGTTGGacgatctgtctgtctctgtgtcctcgtccttgtcctcctcctcctcttcatccccCTCTCCGGACTTTGTGGACTGTGTGAGGGCGAGTGAGGTGTGTAACCTGAGTCCTCAGTGCAGCTCTCGCTATCGCATCATGAGGCAGTGCCTCGTGGGTAAAGACTGGAACTCCATGTTGGCCAATAAGGAGTGCCAGGCGGCGCTGGAGGTTCTGCAGGAGACGCCGCTGGTGGAGTGTCGCTGTAAGCGAGGGATGAAGAGGGAGTTACAGTGTCTGCAGAACTACTGGAGCATCCACATGGGCCTCAGTGAAGgaGAAGATTTCTACGAAGCGTCTCCATATGAGCCTCTGCCTCCTGTCCGTCACTCTGATGCCTTCCGTCTGGCCTCCATCATCTCCGGTATGAACAGCGGTACAGGTAAAGCTCAGTCTCATTGTTCTGATGCCAGTCGTACCTGTAACCAGTGTCTGGACGCCACGAAAGCGTGCAACCTGAACGATAACTGCAAGCGTCAGCGCTCCAACTACATCAGCACGTGCACACGCAGCGAGTGCAACAGGAAGCGATGTCACAAGGCATTACGTCAGTTCCTGGAGCGCGTGGAGTCGCAGTACAGCTTCGGCCTGCTGTTCTGCTCGTGCCAAGACCAAGGCTGCGCCGAGAGGAGACGCCAGACCATCGTCCCCAACTGCGCCTACGAGGACAAGCTCAAACCAAACTGTCTGCAGCTGCGCAAGACCTGCCGCCTCGACCCCTTCTGCAGgtcCAGGCTGGCGGATTTCCATACACACTGTCAGATGAGTGAGGACTCCATCAGCACTTGTCCAAACGACGACTACCAGGCCTGTCTCACTGCCTACACCGGCCTCAttgGGACGGACATGACTCCTAACTATGAGGACGCTAATCACACGGACTTCTCCATCTCTCCGTGGTGTAGCTGCAAGAACAGCGGAAACCAGGAGGAAGAGTGTGAGAAGTTCCTGAGGGACTTCAGAGAGAACACCTGTCTGCGTAACGCTATTCAGGCGTTTGGGACGGACGTTCCAAAGACAACAGCATCAACAAACCCCAACGTCCCTCGCACCAACCCTACTGCATACGCCAACGTCACCAAACCTGAATATGAGGAAACTGAACCGAAGTGCAGCACCGCGAAAGGCTTCATCTGTGACGAAGACGAGgACATTATAGGACCTGACGAGAACCCTGAGTGGAATCCCTCAAACTGGAGCGCTGGCCTGAAGCTCTGCACCGAGGCCTGGATGCTCTCGCTGGTCTTCGCTTTAGGAAACATTGCCCTCTGAACTTCAACTCTACCTGAGGTCTTAAACCTGAGGGACTTTACTGGACCCTCAACCAAAATACAGAATCACTTcgcttgtctgtctgtcctctgtATACTGCAACGTTATTTCTTAccaaaaaagataaacaaaacaaaaacaaggcgTGAGAGAATTGTAAAGTGCATACCTATCTGAGACGAGTGCGGAACAGAACAATAAGAGAAAAGTCGTTGATAGATGATAGAGGAAGGTGACAGTGATGAATTCGTCTCGATTTTAAGTGGGATGAACTGACTACAAAATCTcccttgcttttatttttggtaAATCTGTACAGCGTCCCGTCTGGACCCCACCATTTGACCAAACCTTGGATTAACTTTGAGAAATGTGTCGCTTCCATGCTATTACACACGGATTCCACTATTCTGAGAAAAATAGGGCTCTATCTTGACCCTGAAAAGCACCTTCAAGGAACACAGGGTGCTGTCATGCCTTTATATCTGGAAAAATAAGGGACCCTGAAACCACCATTTTTGAGGAACATGTTTTCATCATTGATTTGCACTCTACCTCCACCCTGAATCAcaccatcttcagtaacagctgGGGTTTCAAAATAAGCCCTTATTCCATCCTGGACCCCACCTGGATTCCACCATTCTGAGAAAAACAGGGCTCTGTTCTGCCTCTGTGCACCACCATCTTTGAGGTTACATCAAGGCCTCGCAAACTTCTTCAAACATGGAACAATGGAGCCATCAGAAGATTTTGAACCTACCGTCTTCGAGAAGCATTCAGTTCTATCATAGTTTCACCATTCTGAGGAAAAATAGGGGTCTATCTTCACACTGAAAGGTACCATCTTTGAGTAACACATCCCCATCATTGTTTTTCACCCTACCTCAACCCTGGATCACACCATCTTCATAAAAACTGGGGTCATATAATGCATGAACACATCCATTTTGAGAAACATGGGGTGCAGTCATGCTTTTACACCCAGATTCAACCATTCGGAGGAAATAGGTGTCTGTCCTGACCTTGAAAACATCTTTAAGGAATAGAGTCCACATTATTGTCTGGAACGCATTGTCTTTCCAGAAAACCAGAGTTTCAAAATGACCTTAACCCCTTCCATCCTGGACATCACCATATTCCGTGGAAAACATGAGTCTGTCCCGACCCAGAAAGCCGCCATCTTTGAGAAAGACATCACTGCTTTGGAACCTACCTCCAACACTGGATTGTACCATCTTCAAGAAAGCCTAGGGTTACAAAATCCTATTAAGCAATCTTTTTTACATCCACCATTTTTGATCATGGCTGTGCAATCTTCTTCAACTGGCCATCTTTGGGGGAAAATGGAGTCATCCCATGATTTTGACTCCATCATTTTTTGGAGAAGCACTGGGTCTCAAAAATTCCCTGGAATTCACTATCCATGAGAGAAACTGGGGCAGATATTGTGTTTACACCTGGACTGTACCATCTTGGAGAAAAACTGTGTGCGCTCACACCCTGGATTCTTCAGCTCCCGGCCTGTTCGTGCAACTTCAGACTCCACCATCTTTGAAAGAACTGGAGTTTCATCAAGCTGTTAAACCCTGAACCTTTGGAATAATCTATTCATATTCGTAATGTTCCATCCTTCTTAGTGTTTTTGCCATTCCCTTTTTCTGAGAGGTGCTTTTAGATTGTgctttgattctttttttctcttttgtcacTCACTTTTTGTCAGTCGGGAGTAATTACCTTCATCATGGCGCTTTTTTCCATGTGAAGTGTTTGAAGTATAAGTCTGTATCCTGCTGACACGATGTGAGAGCATGTCGTCGCTGACAGCTTTCTCAGTTCTGTTATGCACTTTCCTGACAGATTCGActcaaggaaaagaaaagaaagatgaaaaagtACTAACTAATTGAGAGGAGTGACCATTTAAAGAAATCGTTCCAGTTTGAAGTGGGCTTGTGATGCTAATGGGCCGCCCACATGTATAATTTTATCCTTTGAAATatgattttcttcttttaaattgTACATAATTATAATGTGAAAGTCTTCAAGTCAGGAACAATGATTGCGGTgaacattgttattattataattcttaTTCCGGGGTGATTGAAGGGAGCGGAAAGGAGCGTGTAAGGGTATTGAACGCTGCATGTTCGGACAGGATTCATCTGGATTTCCGCAGGAAGAGGAAGTAGTTTGGACACAATTTCATAAGTTTGGTCATTGTCACAATACCGACGCCAAAGGACGTGAAAACGTGAGAACTGTAgcgcctaagacttttgccTGCTGAAAAAAGGTTCGGGGATGTTGTCGTCTATTGAAATTATTTCATGTATCGTGGAAGAAAAGCTTGCGCACAAATGCAACTGGGAAACGAATTTCCAACCACGCGAGTtacaaactgcacaaactgcTTTCGTGTCATGTCATATAACATTTCTACAAAAAGAAATAATCTCGTTGTGTTTATCCAGTTATGTGCAATCTATTACGTGgccttattttttttgtcatagttCACGTTCGAAGGGACTCACGCCAGAGACGCAAAGGACGCTGGGTAACAatacagaataaacacagaTCAGTATGCATCATAACGAAAGGAAATGAAGCAATTAACgtttgtgtaaatataaatattcagaaaactgtcaaaaaaacaaaaaaaaatgcagaacgATTACCAAAAGGGTTCATCTAGATGTCTCAAGCATATGTACGTGTTTCACTGATGTAAGCTAATGCTCCATTCGGCAGCACCGAGTCGACGCAGCGTGTACCGAGGAATAGTTTCGCAGGAAGTTCCATGTTTTCCGTTGCCACGGCAATGGAGTGAGATAAAACGCTTGCTTTGCAGAACTGAACGTATattgaaaagaacaaaatgtccttttttcattatattaaaGTGATAATTCATTTATAACTTGTGTAACTTCATGAATTATTTGTCCATGATTGAAATGTGACTCTTTTTTGGGTCAGttgtggggttttttgtttgtttcattgggttttgtttgtttgtttagttttacTTAAGGTTAGCATATGatcaaaacaagaaat

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 119268 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 202846 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 272384 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 326343 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 377824 29239482 ~ 29246316 (+) True G140884
TU166938 lncRNA downstream 223701 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 241477 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 253827 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 255734 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 268736 29964767 ~ 30022919 (+) True G141236
XM_026945772.2 mRNA upstream 123468 29491293 ~ 29500672 (+) True dok2
XM_026945773.2 mRNA upstream 138181 29482016 ~ 29485959 (+) True kazald3
XM_034306467.1 mRNA upstream 151218 29411827 ~ 29472922 (+) True si:ch73-138n13.1
XM_026945916.2 mRNA downstream 92430 29788461 ~ 29799944 (+) True lzts1
XM_026945917.2 mRNA downstream 92430 29788461 ~ 29799944 (+) False lzts1
XM_034306270.1 mRNA downstream 124472 29820503 ~ 29844470 (+) True msi1b
XM_026945697.2 mRNA downstream 164157 29860188 ~ 29876280 (+) True LOC113546008
XM_034306781.1 mRNA downstream 182328 29878359 ~ 29887355 (+) False prkab1b
trnar-ucg_4 other upstream 133953 29490115 ~ 29490187 (+) True trnar-ucg_4
trnag-ccc_2 other upstream 134550 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_3 other upstream 134726 29489342 ~ 29489414 (+) True trnar-ucg_3
trnar-ucg_2 other upstream 135519 29488549 ~ 29488621 (+) True trnar-ucg_2
trnag-ccc_1 other upstream 136097 29487973 ~ 29488043 (+) True trnag-ccc_1
TU166912 other downstream 164230 29860261 ~ 29876266 (+) False LOC113546008
TU166919 other downstream 207497 29903528 ~ 29924206 (+) False LOC113546064
TU166932 other downstream 212384 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other downstream 212384 29908415 ~ 29926735 (+) False LOC113546064
TU166924 other downstream 213998 29910029 ~ 29929154 (+) True G141234

Expression Profile