RNA id: XM_034306976.1


Basic Information

Item Value
RNA id XM_034306976.1
length 2629
RNA type mRNA
GC content 0.49
exon number 23
gene id qars1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22252273 ~ 22266629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCTCTCTCATACTAGCATTTTTCTTTGGCGGTGGCGTGCGTGTGTGGAGCAGTGGAACAGTGGAACATGGCGGATTTGGTGGCTCTTTTTACCTCCATCGGGCTCAGTGAGCAGAAAGCTAAGGAGACGCTAAAAAATGAGCAGCTCAGTTCAGCTCTCAGAGACGCTATTACACAGGCCCAGAAGCTGTTGGGATCCAAAGAAGTGGACAAAGCCATAGGGAACCTGCTGTACAGCATGGCGTCTCGTCTCCGAGACCTTCGGCGCTTGACCTACTTGACTGATTATATCGTCAAACGCAAGATCAACACAGAGCTGCAATTGGCGGCTGCATTAGACTTTGTGAAGAGCCATCCTGAGGATCCTCTGGACAAGAAGGCATTTGAGACTGCTTGTGGTGTGGGAGTTGTTGTCACATCAGAGCAGATTGAAGATGTGGTTGAGCTAAccatcagaaaacacaaagagcaGCTATTGGCTGAGCGATACCGCTTCAACATGGGGCTCCTCATTGGTGAAGCCAGAGCTGCTCTTAAATGGGCAGATGGGAAAATCCTAAAGAACGAAGTAGACTTGCAGGTCTTGCACCTCCTGGGTCCTAAAACCGAGGAAGACCTGGAGAAAAAACCCAAGGCAGATAAAGCCAAACCagcagagaaggagaagaaggaggagacgGTTGAGTCTGTGAATGATGTTAAGATGGGGAAATCTCTGATGGAGCAGCTGAGAGGAGAAGCTCTCAAGTTCCATAAACCAGGTGAGAATTACAAGACTGAAGGTTACGTTGTAACACCAAACACCATGAAACTGCTGAAACAGCACCTGGAACTCACCGgaggacaggttCGGACTCGGTTCCCTCCTGAACCTAATGGCATCCTTCACATCGGCCACGCCAAGGCTATTAACTTCAACTTTGGTTATGCTAAGGCAAATAATGGCATCTGCTTCCTCCGCTACGATGACACAAACccagagaaagaggaggagaaatatttcactgccattagagatatggtggagtggctggGCTATAAGCCCTATGCCATTACTCATGCCTCTGACAACTGTCAAAGGTCAGCTGTAAACTTAATTGTCAGGGGTCATGCGTATGTGTGCCACCAGCGCAGCGAAGAGCTGAAGGGCCACAATGTGCCGCCCTCACCATGGAGGGATCGGCCAGTGGAGGAGTCCATCGTTCTCTTTGAGAGAATGAAGAAGGGCTTGTTTGCAGAGGGTGATGCCACACTCCGCATGAAGATGATCATGGAGGATGGCAAGATGGACCCAGTGGCTTACCGCATCAAATACACGCCTCACCACAGAACAGGAGACACCTGGTGTATATATCCTACATATGACTACACCCACTGCCTGTGTGACTCAAtcgaacacatcacacactcactgtgcaCCAAAGAGTTTCAGTCTAGgCGCTCGTCATATTTCTGGCTGTGCAATGCTCTGGACCTGTACTGCCCTGTGCAGTGGGAGTATGGCAGACTCAACCTCACCTACACGGTCGTCTCCAAGAGGAAGATCATCAAGCTGGTCGAGACAGGGGCTGTCAGAGACTGGGACGACCCACGCCTCTTCACCCTCACTGCTCTCAGGAGACGTGGCTTTCCCTCTGAGGCCATCAACAACTTCTGCGCCCGTGTGGGCGTGACCGTTGCCCAGACAACCACAGAGCCCCACATGTTGGAGGCATGTGTGAGGGATGTGCTTAATGAAACTGCACCGAGGGCCATGGCTGTCCTGGAACCTCTCAAAGTGACCATCACCAATCTGGCTGCTGATGCACAGACTGAGATTCGTGTTCCAGACTTCCCTGCAGATGAGAATAAGGGTAGCCATGTGGTTCCCTTCTCCAAAACAATCTTCATTGAGCAGAGTGACTTCAGAGAGGTAATGGAGAAGGGCTACAAGCGTCTGACTCCTGAGCAGCCAGTAGGCCTGAGGCATGCCGGCTATGTCATCTCTGTGCAGCGTGTCATCAAGGATGACAGTGGTAAAGTGGTGGAGCTGGAGGTGACGTGCACCAGCTCAAATTCTGCTGAGAAACCCAAAGCCTTCATCCACTGGGTCTGCGAGCCCCTGCAGTGTGAAGTGCGCCTCTATGAGCGACTATTCCTCCATAAAAACCCAGAAGACTCATCTGAAGTGCCTAATGGCTTCCTGAGTGACATCAATCCGAATTCCCTGCAAGTGATTGAAAATGCCTTAATTGACCGCTCATTGAGCAAGGCCAAAGTCTTTGATAAATTCCAGTTCGAGAGAGTGGGTTATTTCTCCCTGGATCCAGATAGCACAGCTGATAAGCTGGTTTTCAACAGGACAGTGACACTCAGGGAGGATCCTGGGAAAATCTGAGAGCTCCCCTGGACCAAAGAGCAATGGTTTTATGTATGCTGGACTACATCACTGTGCAGAAATGGCTTGTAACTTATAGGAAATGTATCAGTAATGTTTAAAAGGTGGAAAGTCAAAAGGTTGTATGCTGGTGCTGGGCAGTGTTGGCGCTTACATATGCAATGTTCTTGTGTCTCATGCTGAACTCCTTTCATATGTCTGGGGAAAGATACAAACTTTTggaataaatcatatttaagtaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006425 glutaminyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004819 glutamine-tRNA ligase activity molecular_function

KEGG:

id description
K01886 QARS, glnS; glutaminyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161800 lncRNA upstream 102496 22148623 ~ 22149777 (+) True G137017
TU161753 lncRNA upstream 128522 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 392605 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 412421 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 426951 21824989 ~ 21825322 (+) True G136532
TU161862 lncRNA downstream 38100 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 200138 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 202005 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 204412 22471041 ~ 22471330 (+) True G137088
TU162067 lncRNA downstream 242582 22509211 ~ 22509494 (+) False LOC113533405
XM_026925197.2 mRNA upstream 40252 22205877 ~ 22212021 (+) True LOC113533224
XM_026925194.2 mRNA upstream 47113 22196749 ~ 22205160 (+) True LOC113533222
XM_026925195.2 mRNA upstream 47113 22196749 ~ 22205160 (+) False LOC113533222
XM_026925196.2 mRNA upstream 57549 22187820 ~ 22194724 (+) True LOC113533223
XM_026925368.2 mRNA upstream 70782 22174129 ~ 22181491 (+) True LOC113533311
XM_034306526.1 mRNA downstream 429 22267058 ~ 22359048 (+) True mtor
XM_026925220.2 mRNA downstream 429 22267058 ~ 22359048 (+) False mtor
XM_034306527.1 mRNA downstream 6290 22272919 ~ 22359048 (+) False mtor
XM_026925730.2 mRNA downstream 94161 22360790 ~ 22376465 (+) True exosc10
XM_026925660.2 mRNA downstream 111299 22377928 ~ 22409804 (+) True ppih
trnaa-ugc_5 other upstream 561781 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 562177 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 562535 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 563682 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 564078 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 981719 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1247957 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1483788 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1744988 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1744988 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile