RNA id: XM_034307003.1


Basic Information

Item Value
RNA id XM_034307003.1
length 2665
RNA type mRNA
GC content 0.58
exon number 15
gene id sf3a1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29153546 ~ 29164988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATTCTCATATTCAACACTAGCAGCTTCCCTTGCGTCGGGTGAGGGAGTTTTTCCCGAGCACttttaatgttctttaaaaCGTAAACATATTTTCATATGTTATTCAGAAAATAGGTTTACGTTCTAAGGATCATTAAATAAAGTCCGACGTTGTTCGGACCAGCACAggttgtgtattttatttcttatctgTTAATAAAAGCGAGGTTTGTTGATCAGCCATGCCGCCGGTGCAGATCTCTCAGCCGGAGGCCAACAACAAGGCCGAAGAGCAGAAGGAAGAAACTCCGGCCACTAAACCCATCGTGGGGATCATCTACCCTCCTCCTGAAGTGCGCAACATCGTGGACAAGACCGCCAGCTTCGTAGCGAGGAACGGGCCCGAGTTTGAAGCGAGGATTCGTCAGAACGAGATCAACAACCCCAAGTTTAATTTCCTGAACCCCAGCGACCCGTACCATGCCTACTACCGCCACAAGGTCAACGAGTTCAGAGAGGGCAAAGGTCAGGAGCCGTCGGCTGCCGTGCCTAAGGTCATGCAGCAGGCCATGCAGCAGTCTCAGCAGCAGCTTCCGCAGAAGGTCCAGGCGCAGGTTATCCACGAGACGGTCGTTCCCAAGGAGCCTCCGCCCGAGTTCGAGTTCATGGCCGACCCGCCCTCCATCTCGGCCTTCGACCTGGACGTGGTGAAGCTGACGGCTCAGTTCGTGGCGCGTAACGGCCGCCAGTTCCTCACGCAGCTCATGCAGAAGGAGCAGAGAAACTACCAGTTCGACTTCCTGCGTCCTCAGCACAGCCTCTTCAACTACTTCACCAAACTGGTGGAACAGTACACCAAGatcctgaTTCCTCCGAAAGGACTGCTGCAGAAACTGAAGCGAGAGGCGGAGAATCCCCGCGAGGTCCTCGATCAGgtgaaGTACCGAGTGGAGTGGGCCAAGTACCAGGAgcgagagaggaagaaagaggaggaggagagagagaaggagcgcGTGGCGTACGCTCAGATCGACTGGCACGACTTCGTCGTCGTGGAGACGGTCGACTTCCAGCCCAACGAGCaagGGAACTTCCCTCCTCCCACCACTCCGGAGGAACTGGGAGCTCGCATCCTGATCCAGGAGCGCTACGAGAAGTACGGAGAGAGCgaggaggtggagatggaggtggagagcGAGGACGAGGAGGACGTGCGAGAGACCAGGGACGAGGGACACGCGGCTCAGCCGGACCAGGACACACAGCTGCAGGACATGGACGAGGGTTCGGATGAAGAGGAGGACACGATGAAGGCTCCACTTCCTCCTGAAAACCCCATGCCTCCGCCTCTGCCTCCGACTCCAGACCAGGTCATCATCCGCAAAGACTACGACCCCAaggCCTCTAAGACTCAGATCGTCGTGCCGCCTGGTGACGAGTTCCTCATCTCTCCGATCACGGGTGAGAAGATCCCGGCCAGTAAGATGCAGGAGCACATGCGCATCGGGCTGCTGGACCCGCGCTGGCTGGAGCAGCGAGACCGCAACCTCCGAGAGCGACAGATCGAAGAGGAGGTGTACGCTCCCGGCCTGGACATCGAGAGCAGCCTGAAGCAGCTGGCCGAGAGAAGAACGGATATCTTCGGTGTGGAAGAAACCGCCATCGGTAAGAAGATCGGAGAGGAGGAGATCCAGAAACCTGAGGAGAAGgtgacgTGGGACGGTCACTCGGGCAGCATGGCGCGTACGCAGCAGGCCGCTCAGGCGAACATCACGCTGCAGGAGCAGATCGAAGCCATCCACAAAGCCAAAGGCCTGGTGCAGGAGGACGAGACCAAGGAGAAGATCGGACCCAGCAAACCCAACGAGGCCGCGCCCCCGCCGCTGCCCACCACCGTGCCCACGCTGCCCAAACCCAGCCCTCCCATCAGCACCGCCCCCAGAGCGCCACCTGCAGTTACTCCTCAGGTGCGCACCACCCTGCTCTCCGCCGTGCCCGTTATCCCGAGGCCCCCCATGGCCCCCGTGGTGCGCTTGGCCCCCGGTCAGGTCCTGACCCCGATGCCCCCCATGGTGCACGCTCCTCGCATCAACGTGGTGCCGATGCCCCCGGCCGCGCCCCACATCATGGCTCCCCGACCTCCACCCATGGTGGTGCCTGCAGCGTTCGTACCTGCCCCTCCGGTGCCCCAGCCACCCAGCACTGCCCCCGCCCCCATGCCTCCTGCCCACCCTCCTGCCCCACACGAGGACGAACCGGTCAGCAAGAAGATGAAGACGGAGGACAACCTGATCCCGGAGGACGAGTTCCTGCGCAGAACcaagGGTCCCGTGGCGGTTAAGGTTCAGGTTCCCAACATGCAGGATAAGACTGAATGGAAGCTGAACGGACAAGTACTGAACTTCACACTGCCGCTCACAGACCAGgTGTCTGTCATAAAGGTTAAGATCCACGAGGCCACCGGGATGCCGGCCGGCAAACAGAAACTTCAGTACGAgGGGATTTTCATCAAGGACTCCAACTCTCTGGCCTACTACAACATGAACAACGGATCTGTTATTCACCTGGCACTgaaggagagaggagggaggaagaagtagatcatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctgtctctgtctg

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12825 SF3A1, SAP114; splicing factor 3A subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166319 lncRNA upstream 350375 28748834 ~ 28803171 (+) False slc7a4
TU166296 lncRNA upstream 405091 28640639 ~ 28748455 (+) False G140759
TU166461 lncRNA downstream 74494 29239482 ~ 29246316 (+) True G140884
TU166491 lncRNA downstream 132062 29297050 ~ 29297797 (+) True G140910
TU166505 lncRNA downstream 167426 29332414 ~ 29351756 (+) False LOC117597881
TU166544 lncRNA downstream 255892 29420880 ~ 29421294 (+) True G140935
TU166562 lncRNA downstream 338695 29503683 ~ 29504872 (+) True G140943
XM_026945841.2 mRNA upstream 350372 28788408 ~ 28803174 (+) True slc7a4
XM_026945691.2 mRNA upstream 658513 28468419 ~ 28495033 (+) True glt1d1
XM_034306294.1 mRNA upstream 740387 28325481 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_026945780.2 mRNA downstream 2492 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA downstream 2630 29167618 ~ 29178413 (+) False pold2
XM_034307008.1 mRNA downstream 142023 29307011 ~ 29313313 (+) True bag4
XM_034307010.1 mRNA downstream 142029 29307017 ~ 29310787 (+) False bag4
XM_034307007.1 mRNA downstream 142030 29307018 ~ 29313313 (+) False bag4
XR_004578633.1 other upstream 1126096 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1724069 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 2423715 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2586783 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2676087 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 322985 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 323561 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 324354 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 324532 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 325127 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile