RNA id: XM_034307008.1


Basic Information

Item Value
RNA id XM_034307008.1
length 3822
RNA type mRNA
GC content 0.48
exon number 5
gene id bag4
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29307011 ~ 29313313 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAGAAGGCGGGACATGTCGGAAAgtggatggggaaaaaaaatgagagacggctttagctttagctttgGACGATTCACCTGGATGGCTCATGAATCAGGAAACGCGATCAGACCCTAGATCAGACGGTTATACCTCGATAAAAAACGGACACAGCTGGAATAACGCgatgGATTCGACTCCGTATTGCGGGTATCCGCCCAACTACTGGTACCCTCCTCCGGCCGGGCCGTACAGCACCGCCTACCCGTCCGGACCCGAGATCAACGGACAAGCGCCGTACAATCCACAGGCAATGCCGGCGTATCCGAACGGAGTGTACAACCCGGGTCAGTACCCGCTGAACGTGCTTCACCCGTCCAATCCGTTCTACTGCAGCGAGCAGATCCCTCCCAGACAGCCGCAGTACCACAGTCAGGACCGAACCCCGGCCAGCTCTCCTCAGCCTCCGTACCCCGTTCCTCACTGCCAAGGGGCTCCTGGATTTCCCCCGAGCTCGTACCCGCCTTACGCAGACGGCTGCCCCCCTAATGCCCCCTACCCCCCCCAGCAGCCTGTACCCTCCCGCCCTCAGCCGGAGCCCTGGCCTCATTCAGCGGGATACGGACCCCAAGCGCACTACCCCAACCACACACGCCCTCCGCACCCTCCGCCCTGGCACGGGCCCGCTCCGCCTCCGTACGATCACATTAAGCACaagGAACCACCGTATCCAGGTCACCTGAACAACCGGAACCAACCCAAACCTCGACCCAGCACGCCGAACTCCAACTCCGCCCCCAACCCGGCTCCAAACAAACCCGTGGAGTTCAGCGCCCCGCCTCAGATCTACAGCAAAACGTCATCCGGAGGCGGAAACCAGCCCAAACCGGCGCCgcagcatcagcagcatcagcagcatcagcagagaccctcctcctcctcctcctccgtctGCGCCGCAGCCTCCGAGCAGCGAGAACCCGGGCCTGGCTCGGGTGCAGGAGGTTCTGGCCAGGGTCCATCTGCTGCAGGAAGACGTGGACGAGTTCGTGGGCAAAAAGACGGACAAGAGCTACCGCTGTCTGGAGGAGCTGCTCACCAAAGAGCTGCTGGTCCTGGACTCGGTGGAGACCAACGGCCAGGACGCCGTGCGCTCGGCTCGCAAAGAGGCCGTGCAGAAGATCCAGGCCATTCTGGACCGTCTGGAGAACAAGGCCTTCTAAGAGGAAGATCAGCGGCACTGATTTCACTCGTATCTGTATctctgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgacgaTCGAGCGCACGTGAAATGGAAACGCTGCTTCTCTGCAGACGTTCGTTTGTGTTAATTATTCTGTTTCACGCGTGAAGTTACGCTCGCGTCCGTAACATTCAGAAGATCCAGACCACCTCCAGAACATCATGAGTATATTTCGCAGATCTTTTTTGCTCCTTTGCAGATGCTGAAACATATCGTTCCATCAGCACGCACACTGCCATCCAATCGCTCGCTTCTGATTCCGCGTCTGCTGTTAATCCTCgctcacttcctgttcctcGTTAATAACGCCTCTCTCCTGCACGCTGGGCTTCAGCGCTAACCGTCTGCACGATCTTACAGACTGAGTTCTGAAGGATTAAACCCGAACCCGTTTCGTTCAGCAGCCGCGCTGTTCGCTCGCCGTACGCCGTACGTTCGCTTGTTAGTCTTTCGACTCGTTTCGTTACCGTTTTTAACGCAGCCACGTCGACTTCCTGTCACCGCTTCCCCATTGGCTGAACGTCTGCCGCCATCTTGACTGAGTTTCGTGGTCAACAGCAGTGAATTCAGAAGCGGATGAAGCTGTTTATGTGtaaagcaataaataatttagTGTTTTAATACTTTAACTACGCCACCTGATGTTATTTGTTCGGATTGCGTTCTTTTTGACGAAACGCCTCCATTTTGTCACCGAAGCTAAAATAACTCCATCTCAAATCATGAACCATCAGCTATCATTCTTACATGAAACACTGTGCACTTGAATCGAACGCCAAAATAAATTCGCCCTAAAGTTATGATCTCGTGAAGTTCTCGCTCAGTGCGTCGgccattttgaatatttcaaaCCGTTTGTTGGCTCCGCCCCTTTCTGCACAAAGTATCCAATGCTCCGTGGCTTCATTTCGCAGTGACtataatatcatatcacgaaCGTACGTATTAATAAGTTTCCCGACGCTAACCCTAAGCCTCTGCTTACGATAAAAATACGAGATTAACATTGGCTCGACGCTAAACGTTTCTTAGCGAGTATGATGTAAGAATTTTGGGGAAGTCGTCAAGGCAACGTTAAACACGGTATTGAAACGTAGGATCGGCGTATAAGCAATACTCGCTCGCCTTTTCACAAAAGGTTTACACAACTTTcacgtttttgtttttgtttgtttgtttgtttgtttttttcctctcttgatgTGTGAATCTGAAGTCTAATCTAAAGCCAGTATCCTGTCTAATCTAAAGGTCTCGCATGTTTACAAATgagtcctttttttaaaaaaaaaaagaaaaaaaaaagtataaatttgtatttaaattatcTAAAAGAAAAAGGGGGCATCGACAAGGAAGAACAATCATccttcctttaaaaaaagaaagaaaaaaaaaaggaaattaatgCCGCTACGTTTAATACTTTGCACCAAAGTCACTTTCAGGCGTGTGCCGATGTTGTTATATTGTCATATCACGATAACTAAAGGTTTATTACAATCTTGTCACCAtgtcatatttaaaatattagtcTTTGTGTGTAtagtttaaaaaagtaaatgaagcTTGACAGGCGACCGGTGAGCGCCGACGGGCCCGTGGACGTCCGTATCGGGCCGCTGCCACGAAGAGACGTTGTCATTGGTCTGTTTTGGACCAATCGCGGTTCTTTACGTCCTGCTTTCGGTCTCTATCAAGTTCGACGTCCTGTGATACGaccacagcagcagaaatctGACACGGATGCCTTCTCCACGTCTTTCCACGCGCTCAACGGAAATCTTTATAAACGTATTTCTCAGTCGGACTGATAGTCTTGTCcgccatgttttgttttgttttttccctccaatTTTCATGTTTCTCTTGtctggtgaacagaattatagGATTGTCTTCTCTGAGAAGGAGAAGGACTCACATCAAacttcttaataaaaaaaaaaaaaatgtaggaaaCTTAGAAGACGGCTTTCCTCGTGCCGCCTTCTGACTGGGACGCACTTCATCTCGGGCACGTTAACGCTGCCTGGAACACAGAAACAAcatcgtgtgtgtgttgaatatcTCAGTATTTTGTACCGACTCCGGGCATCGTACTTTGACCACGGACCCTTCAGCAGGTCTTCCTCCAGTTATAAAGGACGAAAACTGTGCCATATCATCGGCAGGTGCTTTTCATAtccgattaaaaaaaaaaaaaaacaataacaagtTAAAGGTGTTGAATCTATCGAGCTCTGCATGTCACccagtctgattttttttttttttttggtgtacgAGTCCTCTTTCCTTCTGTAACTCTGTAAAACCTCATTCTATAAACCCTGAAACTGTACATTACACAATCTTTACACTAAAAGAGTATATTTGTACGTAACTTGTAcatagagaacacacacactgaaaacaggACCAAAAACGTGCTTGCTGAGATCTGGACCGTAAGTGCATGGATTGAACACGAGACGAGGCCACCGGCTCTGACGAGAACAAACAGCTTACATTAAACAATAAGAGTCCTAAA

Function

GO: NA

KEGG:

id description
K09558 BAG4; BCL2-associated athanogene 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166491 lncRNA upstream 9214 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 60695 29239482 ~ 29246316 (+) True G140884
TU166398 lncRNA upstream 140805 29158731 ~ 29166206 (+) False G140830
TU166396 lncRNA upstream 140880 29159129 ~ 29166131 (+) False G140830
TU166397 lncRNA upstream 140880 29159129 ~ 29166131 (+) True G140830
TU166505 lncRNA downstream 19101 29332414 ~ 29351756 (+) False LOC117597881
TU166544 lncRNA downstream 107567 29420880 ~ 29421294 (+) True G140935
TU166562 lncRNA downstream 190370 29503683 ~ 29504872 (+) True G140943
TU166938 lncRNA downstream 606419 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 624195 29937508 ~ 29954068 (+) False G141247
XM_026945780.2 mRNA upstream 128598 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA upstream 128598 29167618 ~ 29178413 (+) False pold2
XM_034307003.1 mRNA upstream 142023 29153546 ~ 29164988 (+) True sf3a1
XM_026945841.2 mRNA upstream 503837 28788408 ~ 28803174 (+) True slc7a4
XM_026945691.2 mRNA upstream 811978 28468419 ~ 28495033 (+) True glt1d1
XM_026945870.2 mRNA downstream 2506 29315819 ~ 29318495 (+) True LOC113546128
XM_034307021.1 mRNA downstream 5709 29319022 ~ 29325104 (+) False rsph14
XM_034307022.1 mRNA downstream 5844 29319157 ~ 29325104 (+) False rsph14
XM_034307018.1 mRNA downstream 6963 29320276 ~ 29325104 (+) False rsph14
XM_034307015.1 mRNA downstream 7201 29320514 ~ 29325104 (+) False rsph14
XR_004578633.1 other upstream 1279561 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1877534 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 2577180 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2740248 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2829552 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 174660 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 175236 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 176029 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 176207 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 176802 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile