RNA id: XR_003402857.2


Basic Information

Item Value
RNA id XR_003402857.2
length 1513
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC113527270
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10944657 ~ 10948346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCATGTAGAGTGGGATGAGCCCACTGGGATGGGTCCTGCCAGTGACGGTTCAGGTCAAAACCCATCAGGGAGCACCTGCACGAAGAAGCAAGTAAACAAGAGGAAAGGAAAGGCAGAGCTGAgtatcatcagcatagcagGGATGAAGAATGGGTGATGGTGCCCAACAAGGAGTACAGTGAGAAGAGGAGGGAGCCAAGCACTAGTCCTTGAGGCTGCCAGGCCCTATGCTACCAAATAGCTATGTACAGAACCATGGTAATGGATGACTTCTCTGCTCCTCCAGAATTtgcagacagatggagggacagagagacagatgtccCAGTGAAGGCTTTAGTAGGTGCTATTGAGCTTAGGTAGAGGATCCATGACTTTGAGCGGCAGTCGGAGTCAATGCCGCAGCTTGCACAACATCACTAATCCCCTAGTCAGCAAGGATTGATCCTGCGTTCCTCTCCacatctgatctctctctctctcagccataCTGCTGAGGCAGCAAAGGTGTGATGGAGTGTGAGAATGTATGCAAAAAAAGAGGGAGCCACCTGTCACTCATCCTGCACCATTACTTCAGTCATCAACTCTTATTCATTTATGCCATGTTTAAGCCCCACTTGACCCCCGTCACCACCTTAGAGGGGTCAATCGCTGCCTCTCTCACTGTGCTTCTGCAGTGCAGCCTGGCTGACACCAGATGGCAGCCAGTGATGCCCTTTTTTCTAGGTCTGTGGGAGTACACAGCAGGTTATTGGTATTCAGTGCAGCCACCGCCATTAAGTAAAAGGCAATTATGGAATGGAGAGTAGAAACGATGCTCGCAGTGACCGAGTGACTGCAGCCCAGTGTAAAGTTGGGTGTGTTCTTCTGGAGCTCACAGAAATGTCCTGATACAGACTTCTGGTGTAAGTTTGGATATATCATCGTTAAATAACTGTCACTTCTAAGGATGTTGGCTGCATGCTCATGCAGCACAGGACATTTCACTAGCTTTGATGGACGATGATGGATCTACTACCTAGTGTCTCTTATCATGAAAAATGTCAGGGCTTGGCAAAGGTAAGCTGTTCTTAGATCACTGTAAATAGCACTTACTGGAACACAGCCTGATCCCACATGCATACACGCACACCATCCAAAGTATGAATCATAAGAACCTTAACATACAAATTTACTTGAATGTAAGAGTAATAAAGAAAAGTGCCAGCTCTGCAGACATATATCTCTCCAGTTGTTCCTCTCCAGCCCCCACCACACACATCGAGCAGCATTAGACTGCTTCCTGCCCCATACACCCTGATTCTTATACTTCAGCGCCACTGCAGCACCAACGCTTTCCAGCTCTTAATCCATCACAGAGATCTGGGTTCATTGAGCAGAACCTTTCTTCTAAGCACATAAGCACGCATGTCCTTCATTTCGTCCCTTTCTAAAATGCAGCCTATGCAGATAGCATGCACTGAGCTGATCTTTCTGGATGGTGAAGTTTAGAAAGCAGTAGGAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154234 lncRNA upstream 28032 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 33282 10911164 ~ 10911375 (+) True G130611
TU154225 lncRNA upstream 34450 10909893 ~ 10910207 (+) True G130609
TU154224 lncRNA upstream 35940 10908354 ~ 10908717 (+) True G130608
TU154089 lncRNA upstream 82019 10862404 ~ 10862638 (+) True G130492
XR_004578615.1 lncRNA downstream 407103 11355449 ~ 11359380 (+) True LOC117597850
TU154619 lncRNA downstream 600616 11548962 ~ 11552031 (+) True G130960
TU154744 lncRNA downstream 729557 11677903 ~ 11689674 (+) False uck2a
TU154767 lncRNA downstream 768486 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 1033419 11981765 ~ 11988425 (+) False foxp3a
XM_026919639.2 mRNA upstream 42581 10895439 ~ 10902076 (+) True dnttip2
XM_026928700.2 mRNA upstream 50606 10883535 ~ 10894051 (+) True gclm
XM_026927752.2 mRNA upstream 61653 10875410 ~ 10883004 (+) True slc5a9
XM_026922991.2 mRNA upstream 70531 10870123 ~ 10874126 (+) False mrpl55
XM_026922760.2 mRNA downstream 271205 11219551 ~ 11288918 (+) False elavl4
XM_026922735.2 mRNA downstream 271206 11219552 ~ 11288918 (+) False elavl4
XM_026922768.2 mRNA downstream 271206 11219552 ~ 11288918 (+) False elavl4
XM_026922744.2 mRNA downstream 271206 11219552 ~ 11288918 (+) False elavl4
XM_026922752.2 mRNA downstream 271207 11219553 ~ 11288918 (+) False elavl4
TU154218 other upstream 70640 10870134 ~ 10874017 (+) False mrpl55
TU153993 other upstream 381096 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 586342 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 2632001 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2972908 7968235 ~ 7971749 (+) True LOC113526371
XR_003403321.2 other downstream 673956 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 673964 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 673964 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 673964 11622310 ~ 11633844 (+) False LOC113530800
TU154756 other downstream 757309 11705655 ~ 11709432 (+) False porcn

Expression Profile