Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403420.2 |
| length | 955 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC113533555 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 18395861 ~ 18416432 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403400.1 | lncRNA | upstream | 123011 | 18271945 ~ 18272850 (+) | True | LOC113533181 |
| XR_003403401.1 | lncRNA | upstream | 123011 | 18272436 ~ 18272850 (+) | False | LOC113533181 |
| XR_003403399.2 | lncRNA | upstream | 124097 | 18270496 ~ 18271764 (+) | True | LOC113533180 |
| TU159097 | lncRNA | upstream | 273700 | 18121879 ~ 18122161 (+) | True | G134655 |
| TU159020 | lncRNA | upstream | 311382 | 18074135 ~ 18084479 (+) | True | G134598 |
| TU159253 | lncRNA | downstream | 19778 | 18436210 ~ 18444619 (+) | False | pbx3b |
| TU159265 | lncRNA | downstream | 19778 | 18436210 ~ 18444619 (+) | True | pbx3b |
| TU159581 | lncRNA | downstream | 316966 | 18733398 ~ 18733630 (+) | True | G135076 |
| TU159590 | lncRNA | downstream | 396058 | 18812490 ~ 18812710 (+) | True | G135085 |
| XR_003403430.2 | lncRNA | downstream | 453985 | 18870417 ~ 18871905 (+) | False | LOC113533586 |
| XM_026925166.2 | mRNA | upstream | 98380 | 18291489 ~ 18297481 (+) | True | vgll4l |
| XM_026925112.2 | mRNA | upstream | 120393 | 18273663 ~ 18275468 (+) | True | dgcr6 |
| XM_026925657.2 | mRNA | upstream | 137137 | 18252746 ~ 18258724 (+) | True | rpl6 |
| XM_026925385.2 | mRNA | upstream | 144157 | 18241929 ~ 18251704 (+) | True | acaa2 |
| XM_026925165.2 | mRNA | upstream | 180718 | 18206007 ~ 18215143 (+) | False | vsig8b |
| XM_026925843.2 | mRNA | downstream | 19753 | 18436185 ~ 18681932 (+) | False | pbx3b |
| XM_034307036.1 | mRNA | downstream | 19753 | 18436185 ~ 18681931 (+) | False | pbx3b |
| XM_034307037.1 | mRNA | downstream | 19754 | 18436186 ~ 18681931 (+) | False | pbx3b |
| XM_034307038.1 | mRNA | downstream | 19754 | 18436186 ~ 18681930 (+) | False | pbx3b |
| XM_026925848.2 | mRNA | downstream | 19754 | 18436186 ~ 18561640 (+) | False | pbx3b |
| XR_003403426.2 | other | upstream | 346972 | 18030975 ~ 18048889 (+) | True | vdac3 |
| TU158711 | other | upstream | 1098978 | 17296111 ~ 17296883 (+) | True | G134341 |
| XR_003402556.2 | other | upstream | 1660526 | 16716133 ~ 16735335 (+) | False | bicdl1 |
| TU158261 | other | upstream | 1795276 | 16580453 ~ 16600585 (+) | False | mtmr3 |
| TU158256 | other | upstream | 1801458 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| TU159255 | other | downstream | 19778 | 18436210 ~ 18461934 (+) | False | pbx3b |
| TU159806 | other | downstream | 1071055 | 19487487 ~ 19502643 (+) | True | G135287 |
| XR_004578531.1 | other | downstream | 1805983 | 20222415 ~ 20442191 (+) | True | LOC113533440 |
| XR_004578533.1 | other | downstream | 1805983 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
| XR_004578532.1 | other | downstream | 1805983 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
