Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578603.1 |
| length | 373 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 4 |
| gene id | LOC117597839 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 17857126 ~ 17861186 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU158926 | lncRNA | upstream | 117879 | 17738950 ~ 17739247 (+) | True | G134521 |
| TU158921 | lncRNA | upstream | 120355 | 17736387 ~ 17736771 (+) | True | G134516 |
| XR_003403395.2 | lncRNA | upstream | 142302 | 17699403 ~ 17714824 (+) | True | LOC113533142 |
| XR_003403396.2 | lncRNA | upstream | 142302 | 17699403 ~ 17714824 (+) | False | LOC113533142 |
| TU158861 | lncRNA | upstream | 246071 | 17610853 ~ 17611055 (+) | True | G134466 |
| TU158942 | lncRNA | downstream | 8685 | 17869871 ~ 17870330 (+) | True | G134536 |
| TU158946 | lncRNA | downstream | 15188 | 17876374 ~ 17876727 (+) | True | G134540 |
| TU158956 | lncRNA | downstream | 34525 | 17895711 ~ 17895931 (+) | True | G134550 |
| TU158957 | lncRNA | downstream | 35047 | 17896233 ~ 17896442 (+) | True | G134551 |
| TU158959 | lncRNA | downstream | 36202 | 17897388 ~ 17897599 (+) | True | G134553 |
| XM_026925239.2 | mRNA | upstream | 235480 | 17611386 ~ 17621646 (+) | True | lhx2b |
| XM_026925238.2 | mRNA | upstream | 408064 | 17411108 ~ 17449062 (+) | False | crb2b |
| XM_026925237.2 | mRNA | upstream | 408064 | 17411109 ~ 17449062 (+) | True | crb2b |
| XM_026925931.2 | mRNA | upstream | 504536 | 17349316 ~ 17352590 (+) | True | seta |
| XM_034306704.1 | mRNA | upstream | 775176 | 17061061 ~ 17081950 (+) | False | LOC117597835 |
| XM_026925790.2 | mRNA | downstream | 44618 | 17905804 ~ 17916639 (+) | True | enkd1 |
| XM_026925789.2 | mRNA | downstream | 44620 | 17905806 ~ 17916639 (+) | False | enkd1 |
| XM_026925792.2 | mRNA | downstream | 67238 | 17928424 ~ 17939695 (+) | False | polb |
| XM_026925793.2 | mRNA | downstream | 67635 | 17928821 ~ 17939695 (+) | True | polb |
| XM_026925794.2 | mRNA | downstream | 169789 | 18030975 ~ 18048321 (+) | False | vdac3 |
| TU158711 | other | upstream | 560243 | 17296111 ~ 17296883 (+) | True | G134341 |
| XR_003402556.2 | other | upstream | 1121791 | 16716133 ~ 16735335 (+) | False | bicdl1 |
| TU158261 | other | upstream | 1256541 | 16580453 ~ 16600585 (+) | False | mtmr3 |
| TU158254 | other | upstream | 1262723 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| XR_003403426.2 | other | downstream | 169789 | 18030975 ~ 18048889 (+) | True | vdac3 |
| TU159255 | other | downstream | 575024 | 18436210 ~ 18461934 (+) | False | pbx3b |
| TU159806 | other | downstream | 1626301 | 19487487 ~ 19502643 (+) | True | G135287 |
| XR_004578531.1 | other | downstream | 2361229 | 20222415 ~ 20442191 (+) | True | LOC113533440 |
| XR_004578533.1 | other | downstream | 2361229 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
