Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578636.1 |
| length | 1268 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 3 |
| gene id | LOC117597875 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 3809256 ~ 3816185 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko00350 | Tyrosine metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU149452 | lncRNA | upstream | 31766 | 3750504 ~ 3777490 (+) | False | wdr13 |
| XR_004578595.1 | lncRNA | upstream | 74158 | 3719342 ~ 3735098 (+) | False | LOC117597831 |
| XR_004578594.1 | lncRNA | upstream | 74158 | 3720194 ~ 3735098 (+) | True | LOC117597831 |
| TU149418 | lncRNA | upstream | 107557 | 3684893 ~ 3701699 (+) | False | mknk2b |
| TU149410 | lncRNA | upstream | 177624 | 3629802 ~ 3631632 (+) | True | G126408 |
| TU149462 | lncRNA | downstream | 17493 | 3833678 ~ 3838635 (+) | True | G126453 |
| TU149510 | lncRNA | downstream | 90894 | 3907079 ~ 3964096 (+) | True | G126493 |
| TU149465 | lncRNA | downstream | 154194 | 3970379 ~ 3973284 (+) | True | G126454 |
| TU149545 | lncRNA | downstream | 244094 | 4060279 ~ 4061066 (+) | True | G126525 |
| TU149551 | lncRNA | downstream | 253506 | 4069691 ~ 4132669 (+) | True | G126529 |
| XM_026928561.2 | mRNA | upstream | 1772 | 3802656 ~ 3807484 (+) | False | dohh |
| XM_026928560.2 | mRNA | upstream | 1772 | 3802671 ~ 3807484 (+) | False | dohh |
| XM_034306948.1 | mRNA | upstream | 1772 | 3802726 ~ 3807484 (+) | True | dohh |
| XM_034306949.1 | mRNA | upstream | 1772 | 3802827 ~ 3807484 (+) | False | dohh |
| XM_026928072.2 | mRNA | upstream | 17635 | 3778297 ~ 3791621 (+) | True | haus5 |
| XM_034306950.1 | mRNA | downstream | 2219 | 3818404 ~ 3821091 (+) | True | smim24 |
| XM_026928275.2 | mRNA | downstream | 279088 | 4095273 ~ 4104819 (+) | True | si:ch73-233m11.2 |
| XM_026928566.2 | mRNA | downstream | 302850 | 4119035 ~ 4131370 (+) | True | abtb1 |
| XM_026928207.2 | mRNA | downstream | 336852 | 4153037 ~ 4177850 (+) | False | slc6a6a |
| XM_026928206.2 | mRNA | downstream | 336853 | 4153038 ~ 4177850 (+) | True | slc6a6a |
| XR_003403572.2 | other | upstream | 1577116 | 2216102 ~ 2232140 (+) | False | alkal1 |
| TU147950 | other | upstream | 1877838 | 1877041 ~ 1931418 (+) | False | LOC113535242 |
| TU147915 | other | upstream | 2002466 | 1803497 ~ 1806790 (+) | True | si:ch211-229n2.7 |
| TU147818 | other | upstream | 2462671 | 1344336 ~ 1346585 (+) | True | G125062 |
| TU147636 | other | upstream | 2702969 | 1103735 ~ 1106287 (+) | False | lonrf1l |
| XR_004578620.1 | other | downstream | 279084 | 4095269 ~ 4101689 (+) | False | si:ch73-233m11.2 |
| TU149628 | other | downstream | 404499 | 4220684 ~ 4278077 (+) | False | ssuh2rs1 |
| XR_004578621.1 | other | downstream | 927054 | 4743239 ~ 4762991 (+) | False | srpk3 |
| XR_004578572.1 | other | downstream | 2940578 | 6756763 ~ 6805310 (+) | False | phf19 |
| XR_004578571.1 | other | downstream | 2940578 | 6756763 ~ 6796076 (+) | False | phf19 |
