RNA id: trnaa-ugc_4


Basic Information

Item Value
RNA id trnaa-ugc_4
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaa-ugc_4
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21690025 ~ 21690096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGATGTAGCTCAGTGGAAGAGCGCATGCTTTGCATGTATGAGGTCCAGGGTTCAATCCCCTGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161152 lncRNA upstream 2596 21674858 ~ 21687429 (+) False G136466
TU161109 lncRNA upstream 328145 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 342864 21346845 ~ 21347161 (+) True G136429
TU160650 lncRNA upstream 724557 20947304 ~ 20965468 (+) False G136056
TU161219 lncRNA downstream 107180 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 107180 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 134893 21824989 ~ 21825322 (+) True G136532
TU161246 lncRNA downstream 149536 21839632 ~ 21839852 (+) True G136544
TU161242 lncRNA downstream 153091 21843187 ~ 21859668 (+) False LOC113533434
XM_026925206.2 mRNA upstream 2585 21674736 ~ 21687440 (+) True LOC113533228
XM_034306537.1 mRNA upstream 17600 21623985 ~ 21672425 (+) True fgd
XM_026925264.2 mRNA upstream 73942 21567910 ~ 21616083 (+) True LOC113533260
XM_026925443.2 mRNA upstream 127455 21489384 ~ 21562570 (+) True mib2
XM_034306635.1 mRNA downstream 3938 21694034 ~ 21742561 (+) True LOC113533227
XM_026925406.2 mRNA downstream 53846 21743942 ~ 21766390 (+) True brpf1
XM_026925407.2 mRNA downstream 53846 21743942 ~ 21766390 (+) False brpf1
XM_034306993.1 mRNA downstream 91127 21781223 ~ 21797769 (+) False LOC113533123
XM_034306992.1 mRNA downstream 91128 21781224 ~ 21797769 (+) True LOC113533123
trnat-cgu_3 other upstream 287 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1434 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 1830 21688124 ~ 21688195 (+) True trnaa-ugc_2
TU160573 other upstream 942169 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 957554 20732400 ~ 20732471 (+) True trnae-cuc_20
trnaa-ugc_5 other downstream 325 21690421 ~ 21690492 (+) True trnaa-ugc_5
XR_004578647.1 other downstream 1558252 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1824490 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 2060321 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 2321521 24011617 ~ 24013726 (+) False fkbp1aa