RNA id: trnar-ucg_4


Basic Information

Item Value
RNA id trnar-ucg_4
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-ucg_4
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29490115 ~ 29490187 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcCCAGTGGCCTAACGGATAAGGCATCAGCCTTCGGAGCTGAGgattgtgggttcgagtcccaTCTGGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166544 lncRNA upstream 68821 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 138359 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 192318 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 243799 29239482 ~ 29246316 (+) True G140884
TU166397 lncRNA upstream 323984 29159129 ~ 29166131 (+) True G140830
TU166562 lncRNA downstream 13496 29503683 ~ 29504872 (+) True G140943
TU166938 lncRNA downstream 429545 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 447321 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 459671 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 461578 29951765 ~ 29954068 (+) True G141247
XM_026945773.2 mRNA upstream 4156 29482016 ~ 29485959 (+) True kazald3
XM_034306467.1 mRNA upstream 17193 29411827 ~ 29472922 (+) True si:ch73-138n13.1
XM_026945772.2 mRNA downstream 1106 29491293 ~ 29500672 (+) True dok2
XM_034306928.1 mRNA downstream 133953 29624140 ~ 29696031 (+) True gfra2a
XM_026945916.2 mRNA downstream 298274 29788461 ~ 29799944 (+) True lzts1
XM_026945917.2 mRNA downstream 298274 29788461 ~ 29799944 (+) False lzts1
XM_034306270.1 mRNA downstream 330316 29820503 ~ 29844470 (+) True msi1b
trnag-ccc_2 other upstream 525 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_3 other upstream 701 29489342 ~ 29489414 (+) True trnar-ucg_3
trnar-ucg_2 other upstream 1494 29488549 ~ 29488621 (+) True trnar-ucg_2
trnag-ccc_1 other upstream 2072 29487973 ~ 29488043 (+) True trnag-ccc_1
XR_004578633.1 other upstream 1462665 28019471 ~ 28027450 (+) False arpc5la
TU166912 other downstream 370074 29860261 ~ 29876266 (+) False LOC113546008
TU166919 other downstream 413341 29903528 ~ 29924206 (+) False LOC113546064
TU166932 other downstream 418228 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other downstream 418228 29908415 ~ 29926735 (+) False LOC113546064
TU166924 other downstream 419842 29910029 ~ 29929154 (+) True G141234