RNA id: TU205446


Basic Information

Item Value
RNA id TU205446
length 203
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G173525
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 117097 ~ 117299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACTATACTCCCTACTATACTGGACACTGTACTGCACACTATGCAGCACACGACACTGTGTACTATACTCCCTACTATACTGGATACTGTACTGCACACTATGCAGCACACGACACTGTGTACTATACTCCATACTATACTGGACACTGTACTGCACACTATGCATCATACGACACTGTGTACTATACTCCCTACTATACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205486 lncRNA downstream 133200 250499 ~ 250827 (+) True G173563
TU205465 lncRNA downstream 146067 263366 ~ 263913 (+) True G173543
TU205591 lncRNA downstream 217729 335028 ~ 335754 (+) False G173662
TU205592 lncRNA downstream 217729 335028 ~ 335754 (+) True G173662
TU205609 lncRNA downstream 330391 447690 ~ 447950 (+) True G173679
XM_026930346.2 mRNA upstream 75993 37138 ~ 41104 (+) True LOC113536444
XM_034308862.1 mRNA downstream 2496 119795 ~ 140572 (+) True copb1
XM_034308652.1 mRNA downstream 38230 155529 ~ 194491 (+) True rras2
XM_034308653.1 mRNA downstream 49747 167046 ~ 194491 (+) False rras2
XM_034308433.1 mRNA downstream 83829 201128 ~ 263060 (+) False tub
XM_034308435.1 mRNA downstream 83829 201128 ~ 263060 (+) False tub
TU205686 other downstream 451514 568813 ~ 570326 (+) True G173748
TU205778 other downstream 624722 742021 ~ 742710 (+) True G173819
TU205870 other downstream 1244483 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1941671 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1960778 2078077 ~ 2078627 (+) True G174546

Expression Profile