RNA id: TU205609


Basic Information

Item Value
RNA id TU205609
length 261
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G173679
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 447690 ~ 447950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCtgcagcgctacagctctgtgctttggctcagtttagcagctcgcataaaaatctacaaaacaCACGGCGAgtctgattcacttcctgcagcgagtcgattcagagtcgaatcactttctgACTCTGAATCGGATCGACAGCACTTCGCTCAGACGCTCTCGGACCCGAGTGTGAtcgctgtgttctcacctgacTAAAGAACCGCACCGAggaggagaacacaccagggttctgttCAACCTCACTAAACACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205591 lncRNA upstream 111936 335028 ~ 335754 (+) False G173662
TU205592 lncRNA upstream 111936 335028 ~ 335754 (+) True G173662
TU205465 lncRNA upstream 183777 263366 ~ 263913 (+) True G173543
TU205486 lncRNA upstream 196863 250499 ~ 250827 (+) True G173563
TU205446 lncRNA upstream 330391 117097 ~ 117299 (+) True G173525
TU205662 lncRNA downstream 85225 533175 ~ 534931 (+) True G173724
TU205663 lncRNA downstream 87600 535550 ~ 536301 (+) True G173725
TU205689 lncRNA downstream 124538 572488 ~ 572792 (+) True G173749
TU205694 lncRNA downstream 137506 585456 ~ 586133 (+) True G173752
TU205701 lncRNA downstream 144779 592729 ~ 593644 (+) True G173756
XM_034308433.1 mRNA upstream 184630 201128 ~ 263060 (+) False tub
XM_026930652.2 mRNA downstream 195869 643819 ~ 647035 (+) True slc7a6os
XM_034308878.1 mRNA downstream 298013 745963 ~ 758953 (+) True LOC117598424
XM_034308879.1 mRNA downstream 342424 790374 ~ 822723 (+) True ccdc102a
XM_026930339.2 mRNA downstream 404357 852307 ~ 894448 (+) True dok4
XM_026930340.2 mRNA downstream 404874 852824 ~ 894448 (+) False dok4
TU205686 other downstream 120863 568813 ~ 570326 (+) True G173748
TU205778 other downstream 294071 742021 ~ 742710 (+) True G173819
TU205870 other downstream 913832 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1611020 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1630127 2078077 ~ 2078627 (+) True G174546

Expression Profile