RNA id: TU205663



Basic Information


Item Value
RNA id TU205663
length 583
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G173725
representative True

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 535550 ~ 536301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


cttcctgtcactctctctcttcctctctctctcttcctctctcattctctctcttcctctcgctccctctctttctctctctatttctctcttctcttgaGGAAATGCCATTAAACAGAGGACGACGTGTTTACGAGCAGCTGCTCTTCTTtggaaaaaagataaagaagtACGATACAGAGTGAGCTCCTATTGAAGTGGCTGTGCAGTCCTCATTTAAACTCCATTCATGGGCTCACCCTGTAATTACGATGCCTGCGGACGcaacgtatacacacacacactcacacacacacacacacactgatgtatagtaaatatatatatatatatatctttagaAGAATAAGAAATCCGAGCCTTACAGCCACTAGCACGCaaacagagaagagaaagagaaaatgacgGGGTGAGACGGGACGGCGCTTACCAGGAGCCGCCTGCAGTATCCGAAACGCCGACTTCCGTCTTCTCCCGTCAGCATGAAGGAGAAGGTCTCACTgcgaatcacacacacacacacacacacacacacacacacacacaaagggtgTTTTGTGGAAGCATTCCGAGCTGTAGCTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU205662 lncRNA upstream 619 533175 ~ 534931 (+) True G173724
TU205609 lncRNA upstream 87600 447690 ~ 447950 (+) True G173679
TU205591 lncRNA upstream 199796 335028 ~ 335754 (+) False G173662
TU205592 lncRNA upstream 199796 335028 ~ 335754 (+) True G173662
TU205465 lncRNA upstream 271637 263366 ~ 263913 (+) True G173543
TU205689 lncRNA downstream 36187 572488 ~ 572792 (+) True G173749
TU205694 lncRNA downstream 49155 585456 ~ 586133 (+) True G173752
TU205701 lncRNA downstream 56428 592729 ~ 593644 (+) True G173756
TU205702 lncRNA downstream 56540 592841 ~ 593644 (+) False G173756
TU205706 lncRNA downstream 58510 594811 ~ 596679 (+) True G173758
XM_034308433.1 mRNA upstream 272490 201128 ~ 263060 (+) False tub
XM_026930652.2 mRNA downstream 107518 643819 ~ 647035 (+) True slc7a6os
XM_034308878.1 mRNA downstream 209662 745963 ~ 758953 (+) True LOC117598424
XM_034308879.1 mRNA downstream 254073 790374 ~ 822723 (+) True ccdc102a
XM_026930339.2 mRNA downstream 316006 852307 ~ 894448 (+) True dok4
XM_026930340.2 mRNA downstream 316523 852824 ~ 894448 (+) False dok4
TU205686 other downstream 32512 568813 ~ 570326 (+) True G173748
TU205778 other downstream 205720 742021 ~ 742710 (+) True G173819
TU205870 other downstream 825481 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1522669 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1541776 2078077 ~ 2078627 (+) True G174546

Expression Profile