RNA id: TU205778


Basic Information

Item Value
RNA id TU205778
length 238
RNA type TUCP
GC content 0.54
exon number 3
gene id G173819
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 742021 ~ 742710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGAGGAAGAGTGCAGGACATGGGGAACCTGCTCTGTGAGACTCACAGGGAGTGTGACCAGCTAACGAACgaacGTGACCGAGAGCGGGAGGCTCACAGCATCCTCCAGACGGAGAACGATGAGCTGAAGAAGACTCTGATGCACAAGGACGAGTTCCTGAAGGTCTCCCTGACTGAAGCAGTGGAGAAACATCAGAAGGCTGTGGAGACCATTGCTCAGCTGGAGGCTGAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205711 lncRNA upstream 2514 687350 ~ 739507 (+) True G173761
TU205723 lncRNA upstream 128044 613465 ~ 613977 (+) True G173769
TU205706 lncRNA upstream 145342 594811 ~ 596679 (+) True G173758
TU205701 lncRNA upstream 148377 592729 ~ 593644 (+) True G173756
TU205702 lncRNA upstream 148377 592841 ~ 593644 (+) False G173756
TU205780 lncRNA downstream 19494 762204 ~ 790257 (+) True G173821
TU205783 lncRNA downstream 21630 764340 ~ 820140 (+) False G173823
TU205782 lncRNA downstream 55343 798053 ~ 820140 (+) True G173823
TU205786 lncRNA downstream 73203 815913 ~ 822683 (+) False ccdc102a
TU205819 lncRNA downstream 166929 909639 ~ 910317 (+) True G173854
XM_026930652.2 mRNA upstream 94986 643819 ~ 647035 (+) True slc7a6os
XM_034308433.1 mRNA upstream 478961 201128 ~ 263060 (+) False tub
XM_034308878.1 mRNA downstream 3253 745963 ~ 758953 (+) True LOC117598424
XM_034308879.1 mRNA downstream 47664 790374 ~ 822723 (+) True ccdc102a
XM_026930339.2 mRNA downstream 109597 852307 ~ 894448 (+) True dok4
XM_026930340.2 mRNA downstream 110114 852824 ~ 894448 (+) False dok4
XM_034308551.1 mRNA downstream 153437 896147 ~ 908435 (+) True dnaaf1
TU205686 other upstream 171695 568813 ~ 570326 (+) True G173748
TU205870 other downstream 619072 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1316260 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1335367 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 2904660 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 3538534 4281244 ~ 4297247 (+) False nadsyn1

Expression Profile