RNA id: TU206008


Basic Information

Item Value
RNA id TU206008
length 356
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G174023
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1628844 ~ 1629199 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAAAACTAGCACACACTGGTCCCAAAAAGTGCAATTTCAGTAGGAGTCTCGAACTGCATCATCATTTTCTCAGTGTTCATTCAGTTTAAGCCAAATTTGTCAGAATATAGTGTTACCATAAAAACCACCATCTGTTCAtgactaacattagctaagatAGCTAGTTGGCTAGTTAACTGCCAGTAAACTAGCACACATTTGTCACAAAAGGTTGATTTCAGTAAGAGTCTCGATTTCCGTCATTTTCTCAGTGATTATTTAACAGCCAACAAATCTGTCAAAATACAGCGTTGCCATGACAACCACCATCtaaacactaaaaataaaacgtttcatagaaaaaaagactaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206003 lncRNA upstream 10099 1618233 ~ 1618745 (+) True G174018
TU205864 lncRNA upstream 195882 1377204 ~ 1432962 (+) True G173893
TU205849 lncRNA upstream 494232 1134018 ~ 1134612 (+) True G173880
TU205830 lncRNA upstream 603228 1024487 ~ 1025616 (+) True G173865
TU205819 lncRNA upstream 718527 909639 ~ 910317 (+) True G173854
TU206014 lncRNA downstream 17923 1647122 ~ 1649133 (+) True G174026
TU206032 lncRNA downstream 56775 1685974 ~ 1687078 (+) True G174044
TU206434 lncRNA downstream 136104 1765303 ~ 1765661 (+) True G174402
TU206473 lncRNA downstream 273716 1902915 ~ 1904826 (+) True G174437
TU206518 lncRNA downstream 276334 1905533 ~ 1908550 (+) True G174474
XM_034308822.1 mRNA upstream 477088 1150781 ~ 1151756 (+) True exosc6
XM_034308744.1 mRNA upstream 497854 1064081 ~ 1130990 (+) True herc1
XM_026930285.2 mRNA upstream 570259 1049267 ~ 1058585 (+) True fbxo22
XM_026930713.2 mRNA upstream 585757 1034560 ~ 1043087 (+) True LOC113536635
XM_034308883.1 mRNA upstream 604371 1006805 ~ 1024473 (+) True LOC113536571
XM_034308642.1 mRNA downstream 28933 1658132 ~ 1667262 (+) True nucb2a
XM_026930319.2 mRNA downstream 116692 1745891 ~ 1775046 (+) True alx4a
XM_026930782.2 mRNA downstream 409369 2038568 ~ 2043188 (+) True atxn1l
XM_026930780.2 mRNA downstream 450141 2079340 ~ 2111029 (+) True ap1g1
XM_026930781.2 mRNA downstream 450142 2079341 ~ 2111029 (+) False ap1g1
TU205870 other upstream 263913 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 886134 742021 ~ 742710 (+) True G173819
TU205686 other upstream 1058518 568813 ~ 570326 (+) True G173748
TU206587 other downstream 429771 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 448878 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 2018171 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 2652045 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 3027406 4656605 ~ 4661136 (+) True G175977

Expression Profile