RNA id: TU206473


Basic Information

Item Value
RNA id TU206473
length 1568
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G174437
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1902915 ~ 1904826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccgTGACATGCAGGTTTGCTTAAATGTCCCTGAAAATCCAGTACTGCCAtctagtgtgtgtcagtggaaaCACCTACACCACATCCATCaacacaaatacaataaaaacaacaaaatctgGGTGAGTTCACTTTATTGTAACAGATATTTTTACACATGTACGTCCTGTTTAACAGTCACACTTGGTCAAAAAAATGTATTCCAGGTTtataaaaagatgttttttttacctCGTACCATAAAATTTTTTATTGGTTTACTTCTCAGGACAATTTCTGCTCCAATACAAACAAAACACGAGATGTTCTGACTGTTTCCggtccattttctttcttcaaatatacaaaaaaaaagtctagataaaaaggaaaatctaaaacaatataatattaagACTTCGATCATAAGGTtcatcaaagttttttttttttttttttttttttttttaaagtatgctTATACTTTACTTCCTTCCCCTCAAAACAGAGTGCATATATAGGTGTCCTAGTGTTGGGTTACAGTTAAAGAGATTAATCTTCAAAATGTCATCTTTCATAAAAGGAGTCACACACAAGTGAGTGACACGAAAGCAATCGGATTAGAAATAAGGCAATAAAAATCACGGAAATCAGGTTagccctgattaaaaaaaaataataataataagcccaaaaaattcaaaaatgtaaaaaatatgcaATCTGtacataaaaaagacaaaaaaaaaaagaaaacaagtatAACTgaagaaaagatttttaaaaagggaCATCCTAACCACGAAACATGCTAATTAAAGGATCGTTAAAttatatacaaacaaacaaacaaacaaaaacaacaacaaaaacaacactgatgtacaaatgaaaaagaaaagaagtgtCATGCAATAGATGTCGTTAGCTAGGAGGACGTGTGAAGACGAGCGCTGAGAGAAATGCGCAAAAGCTTTTCGTTCCTTCATCTGGGAAGTTTTAGGTGACGATATTTTGAACACAAGCTCACAATAAAAGGTGCATGATTTCGCTTAAAGGAGGCTAACGTggtgaaataaagaaagcagaacGTGCTACACGCTCCACCGTGCTTTCCACAGGTTTACGATTTTCCACAATTTCTAAAGCTTCGTTTTGAtattttgggtaagagtcttgaaaaaaaaaaacaacaacaaaaacatgtaaACTATGCAGAGAAGgtcaatatattttaaatgtagaagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtttcttctttaATACTTCGGCACTTTGGTGTACTCTTCTTGGTGTACGCTCTTACACAGGCCCATGGACAGGATCATGGCGAGTAGCTGCGGGAGAAACGATCATTAATCACCGAGCCGAGGAGAACCGAGGACAGAAATTtggcgcgcgcacgcacacacacacacacacacacacacacacactctctcacacacacacacacacacacacacacactcacacacacagtatcacacagacgcacactcatacacacagacgcacgctatcatacacacacgccacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206434 lncRNA upstream 137254 1765303 ~ 1765661 (+) True G174402
TU206032 lncRNA upstream 215837 1685974 ~ 1687078 (+) True G174044
TU206014 lncRNA upstream 253782 1647122 ~ 1649133 (+) True G174026
TU206008 lncRNA upstream 273716 1628844 ~ 1629199 (+) True G174023
TU206003 lncRNA upstream 284170 1618233 ~ 1618745 (+) True G174018
TU206518 lncRNA downstream 707 1905533 ~ 1908550 (+) True G174474
TU206530 lncRNA downstream 30183 1935009 ~ 1935234 (+) True G174484
TU206521 lncRNA downstream 32007 1936833 ~ 1941900 (+) True G174477
TU206525 lncRNA downstream 114991 2019817 ~ 2021007 (+) True G174479
TU206579 lncRNA downstream 139164 2043990 ~ 2050979 (+) True G174529
XM_026930319.2 mRNA upstream 127869 1745891 ~ 1775046 (+) True alx4a
XM_034308642.1 mRNA upstream 235653 1658132 ~ 1667262 (+) True nucb2a
XM_034308822.1 mRNA upstream 751159 1150781 ~ 1151756 (+) True exosc6
XM_034308744.1 mRNA upstream 771925 1064081 ~ 1130990 (+) True herc1
XM_026930285.2 mRNA upstream 844330 1049267 ~ 1058585 (+) True fbxo22
XM_026930782.2 mRNA downstream 133742 2038568 ~ 2043188 (+) True atxn1l
XM_026930780.2 mRNA downstream 174514 2079340 ~ 2111029 (+) True ap1g1
XM_026930781.2 mRNA downstream 174515 2079341 ~ 2111029 (+) False ap1g1
XM_026930483.2 mRNA downstream 220960 2125786 ~ 2173008 (+) True phlpp2
XM_034308654.1 mRNA downstream 279626 2184452 ~ 2224366 (+) False usp10
TU205870 other upstream 537984 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 1160205 742021 ~ 742710 (+) True G173819
TU205686 other upstream 1332589 568813 ~ 570326 (+) True G173748
TU206587 other downstream 154144 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 173251 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 1742544 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 2376418 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 2751779 4656605 ~ 4661136 (+) True G175977

Expression Profile