RNA id: TU207689



Basic Information


Item Value
RNA id TU207689
length 316
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G175517
representative True

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3605162 ~ 3608844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgcattttaccTGTGTAAGCGATGTTGCCTTGTTCATACCAGGCAGGAGTCGCTCCTGATCGCCTGATCTGAAGTCTAAATACACAGTTTTATGAGAGAAGGTTGAGAACTCGTTGCTGAAGCAGACCTTATAAACACCCGTCATAGCTGTAGTATGGGTAAGGCTGTCGTATTGCTTCTTGCGTTCTTGGTACAAGACATTATTCATTGGATCTGTCACAAAACAGTCAACATCATAGTTGCCTCCAGCAATAACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207662 lncRNA upstream 23223 3579978 ~ 3581939 (+) True G175493
TU207537 lncRNA upstream 152342 3447942 ~ 3452820 (+) True G175389
XR_004579094.1 lncRNA upstream 170461 3432329 ~ 3434701 (+) True LOC117598422
TU207518 lncRNA upstream 218787 3386190 ~ 3386375 (+) True G175370
TU207417 lncRNA upstream 366948 3237884 ~ 3238214 (+) True G175291
TU207699 lncRNA downstream 5347 3614191 ~ 3614397 (+) True G175527
TU207713 lncRNA downstream 36899 3645743 ~ 3646724 (+) False pth1b
TU207924 lncRNA downstream 401394 4010238 ~ 4011233 (+) True G175703
TU207982 lncRNA downstream 559343 4168187 ~ 4168401 (+) True G175744
TU208084 lncRNA downstream 691261 4300105 ~ 4300563 (+) True G175827
XM_026930488.2 mRNA upstream 32899 3565114 ~ 3572263 (+) False LOC113536513
XM_026930487.2 mRNA upstream 32899 3565115 ~ 3572263 (+) True LOC113536513
XM_026930490.2 mRNA upstream 32899 3565152 ~ 3572263 (+) False LOC113536513
XM_026930489.2 mRNA upstream 32899 3565153 ~ 3572263 (+) False LOC113536513
XM_034308869.1 mRNA upstream 252383 3283110 ~ 3352779 (+) True LOC113536476
XM_026930845.2 mRNA downstream 37134 3645978 ~ 3647115 (+) True pth1b
XM_026930804.2 mRNA downstream 38511 3647355 ~ 3658290 (+) True btbd10b
XM_026930351.2 mRNA downstream 303940 3912784 ~ 3922969 (+) True dkk3a
XM_034308627.1 mRNA downstream 303940 3912784 ~ 3922969 (+) False dkk3a
XM_026930288.2 mRNA downstream 411083 4019927 ~ 4039717 (+) True pkd1l2a
TU206600 other upstream 1526535 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 1544879 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2240231 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 2862452 742021 ~ 742710 (+) True G173819
TU205686 other upstream 3034836 568813 ~ 570326 (+) True G173748
TU207714 other downstream 38526 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 672400 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 1047761 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 3513541 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3659040 7267884 ~ 7271320 (+) False rpl37a

Expression Profile