Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU208084 |
| length | 459 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 1 |
| gene id | G175827 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 4300105 ~ 4300563 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko00601 | Glycosphingolipid biosynthesis - lacto and neolacto series |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU207982 | lncRNA | upstream | 131704 | 4168187 ~ 4168401 (+) | True | G175744 |
| TU207924 | lncRNA | upstream | 288872 | 4010238 ~ 4011233 (+) | True | G175703 |
| TU207713 | lncRNA | upstream | 653381 | 3645743 ~ 3646724 (+) | False | pth1b |
| TU207699 | lncRNA | upstream | 685708 | 3614191 ~ 3614397 (+) | True | G175527 |
| TU207689 | lncRNA | upstream | 691261 | 3605162 ~ 3608844 (+) | True | G175517 |
| TU208102 | lncRNA | downstream | 68044 | 4368607 ~ 4368810 (+) | True | G175843 |
| TU208155 | lncRNA | downstream | 85222 | 4385785 ~ 4385994 (+) | True | G175894 |
| TU208168 | lncRNA | downstream | 208853 | 4509416 ~ 4509701 (+) | True | G175905 |
| TU208205 | lncRNA | downstream | 273888 | 4574451 ~ 4574921 (+) | True | G175939 |
| XR_004579122.1 | lncRNA | downstream | 277794 | 4578357 ~ 4583831 (+) | True | LOC117598446 |
| XM_034308572.1 | mRNA | upstream | 738 | 4281246 ~ 4299367 (+) | True | nadsyn1 |
| XM_026930420.2 | mRNA | upstream | 2858 | 4281244 ~ 4297247 (+) | False | nadsyn1 |
| XM_026930437.2 | mRNA | upstream | 71141 | 4206958 ~ 4228964 (+) | True | mmp15b |
| XM_034308801.1 | mRNA | upstream | 154434 | 4142637 ~ 4145671 (+) | True | LOC113536728 |
| XM_026930858.2 | mRNA | upstream | 162717 | 4131602 ~ 4137388 (+) | True | sinhcafl |
| XM_034308571.1 | mRNA | downstream | 1708 | 4302271 ~ 4322689 (+) | True | tpcn2 |
| XM_034308570.1 | mRNA | downstream | 1709 | 4302272 ~ 4322689 (+) | False | tpcn2 |
| XM_026930415.2 | mRNA | downstream | 1710 | 4302273 ~ 4322689 (+) | False | tpcn2 |
| XM_026930325.2 | mRNA | downstream | 185989 | 4486552 ~ 4491375 (+) | True | ccnd1 |
| XM_026930514.2 | mRNA | downstream | 312843 | 4613406 ~ 4645023 (+) | True | ano1a |
| XR_004579071.1 | other | upstream | 2858 | 4281244 ~ 4297247 (+) | False | nadsyn1 |
| TU207714 | other | upstream | 641829 | 3647370 ~ 3658276 (+) | False | btbd10b |
| TU206600 | other | upstream | 2221478 | 2078077 ~ 2078627 (+) | True | G174546 |
| TU206587 | other | upstream | 2239822 | 2058970 ~ 2060283 (+) | True | G174536 |
| TU205870 | other | upstream | 2935174 | 1361782 ~ 1364931 (+) | True | G173898 |
| TU208265 | other | downstream | 356042 | 4656605 ~ 4661136 (+) | True | G175977 |
| XR_003403680.2 | other | downstream | 2821822 | 7122385 ~ 7131506 (+) | False | LOC113536390 |
| TU209855 | other | downstream | 2967321 | 7267884 ~ 7271320 (+) | False | rpl37a |
| trnae-cuc_24 | other | downstream | 3301663 | 7602226 ~ 7602297 (+) | True | trnae-cuc_24 |
| trnar-ucg_6 | other | downstream | 3942859 | 8243422 ~ 8243494 (+) | False | trnar-ucg_6 |
