RNA id: TU208102


Basic Information

Item Value
RNA id TU208102
length 204
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G175843
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4368607 ~ 4368810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatctacaaaactATAAAAACCAATTTAAATACCAAAATTTTGGTATCTAAGGCAATTTCAAGCAGAATATACAGTAAGCAAGAAAAATCCACTCTTATTGGACATACAGGTTACTATTTTGGACCCTTGTGGTATATTGAGAATAATGAAGACAGCAGAGCAGATGGTATTTAAAATAGATGATTTAACCAAAAAAGATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208084 lncRNA upstream 68044 4300105 ~ 4300563 (+) True G175827
TU207982 lncRNA upstream 200206 4168187 ~ 4168401 (+) True G175744
TU207924 lncRNA upstream 357374 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 721883 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 754210 3614191 ~ 3614397 (+) True G175527
TU208155 lncRNA downstream 16975 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 140606 4509416 ~ 4509701 (+) True G175905
TU208205 lncRNA downstream 205641 4574451 ~ 4574921 (+) True G175939
XR_004579122.1 lncRNA downstream 209547 4578357 ~ 4583831 (+) True LOC117598446
TU208223 lncRNA downstream 275775 4644585 ~ 4645018 (+) False ano1a
XM_034308571.1 mRNA upstream 45918 4302271 ~ 4322689 (+) True tpcn2
XM_034308570.1 mRNA upstream 45918 4302272 ~ 4322689 (+) False tpcn2
XM_026930415.2 mRNA upstream 45918 4302273 ~ 4322689 (+) False tpcn2
XM_034308572.1 mRNA upstream 69240 4281246 ~ 4299367 (+) True nadsyn1
XM_026930420.2 mRNA upstream 71360 4281244 ~ 4297247 (+) False nadsyn1
XM_026930325.2 mRNA downstream 117742 4486552 ~ 4491375 (+) True ccnd1
XM_026930514.2 mRNA downstream 244596 4613406 ~ 4645023 (+) True ano1a
XM_026930359.2 mRNA downstream 278587 4647397 ~ 4651092 (+) True fadd
XM_026930608.2 mRNA downstream 323723 4692533 ~ 4725750 (+) True csnk1g1
XM_026930609.2 mRNA downstream 323723 4692533 ~ 4725750 (+) False csnk1g1
XR_004579071.1 other upstream 71360 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 710331 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2289980 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2308324 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 3003676 1361782 ~ 1364931 (+) True G173898
TU208265 other downstream 287795 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2753575 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 2899074 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3233416 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 3874612 8243422 ~ 8243494 (+) False trnar-ucg_6

Expression Profile