RNA id: TU208284


Basic Information

Item Value
RNA id TU208284
length 2200
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G175991
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4737251 ~ 4739666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gccACAGATTATTCTACAGACAGCAAAAAGATCTTTGTACAGAAATAAGCAACAATAAAATTCCTCATCTGGAACACAGTAAAACCTGTCGCTCAAATACCATTTCAGaggcaacaaaaaaacaaagaaaaaaaaaaatatgaccaAGACCAGCTGCCTACTGCTAAGCTATGACACTACATTACACAAATATAGCTTTATATTGAAAACACAGGATATgtaagaaatgttttttttccagaacctgttgaaaaaagtgcaaaaaaggtTTACTGTCTAACAACATATTTTATACCAAATAAGTCGCCCAACTGTTGAACGTGTTCCTGTAACCCGGCGATTCCTTACAGTCATACTGACATTCAAGAAGATGTAAAATGTGACACGATAGTAATCCAAGTCGAGCAAATGATACGATTGCAGTGATGCTGTTCTTTGGGTAAAAGGGACATGATTTCCAGCAGGAGAACATTTGTgttggcagcctgggaaaacccttcatatggtgaaattttgatattttctactgtatttttctattttgcatGTTTCTTAACCTCTAGTATTTTAGCCACAGTTATTGGTTAGTGTAATATCTGCTTCATTGTCCAGGAACTTGATCAAAgactgtgtgagaaaatcacacttagctagtgAGGATTTGGACATCTGTAGACAGACTTAAACTGCCTGCAGGAAGGTAGCCTGTGCAaggttaaaaagtaaataaaaacatttccacattttttttttggtgaaatatatttatgctttctTAAAATGGACGTGTCATTGTATGTTTTAGGCagaataaaatcagattttctttccattttttttttttttaatttgctagaatcagccacagtgacatccaaCGGGTTTTTCCAGACTgccacattattcatttttcattcacattgAAATTCTTCATATAAAATGGCTACATGAGAGgaacaaaaaggaaagaaataaagaacgATCACTGGGAGTCCTGTTCGGAAGATTTGCACTTGACATCCTGATGTGTCGGTGTGTGTCTACAACACATCATAAAATTTAAACTGATACTGAGAATGTGTATACTGCATTTTCCTGTGTCTATGTCTGTGTAACATCAGTTTCCACGTTTCAGTCCATATGAAGTTGaattaatgctaaaaaaaaaaatctgtagagCACCCGACAGGAAACTGAATGTAAGCCGTAGTCTAGCAGCCAGCGCACCCATGATCTCGCAGCTCCATACAAGAGCAAGTCTGTATATCACAGTGGCAGGTGACGCACAAGCGGTGGATTTTTGCTTCCCTCCTTGAAGGATGAGTGTCCGTGCAGACAGAAGTGTAAGGCAATATTCTGAAAGGAGCTCCCATTCGGAAAAATCTTTTCGTACCGAGGATAAATCAACATCACGCCATCCAAGCTCCAGAGAAAACGGAGCGTCGGGTCTCAGAGATAGGAGACCCGTAAGGCTGATGCACTTTCCTCTGAAAACATTGctattgtgaaaaaaatatgaggCAGTTTTGACCTTATATACATATCTATAAgcgtatatgtatataaaataatacaaaaaaacatagaaaataataacaacatggCACAATAGATGACATACAAAAAGGAACGCTGTCGCTTAATCAAAATGCGTAATAcaaaaatgttatgaaaataaaagggACAGTGTCCAATGTTCACCTCACTGGAACGGGtggaaatatatatagataaagagatatagagagagagatcgagagaTACAAAAACGCACAAATGAAACACTGTAAATTGTGCCTTGAGCACCAGCACGAACACCAGCATATTGtaatcttccttttttttttttttaaattcgtAAGGTAACAAACAGCGTTCTccgaagcaaaaaaaaagtgaaacgtTCCCGAAGGAATCAGTACCCAAAATGTTTTTCACTCCTTTAACCGAAGGCCATTTCCTTCCTGAGAGTTAGCAAGGCAAGccaaaatgttcattttctctCATTCGGTTCTGTAAAGGACTGAGAACTCTGTCCATGCCGTGGCGGGTTGTGGATaagagaacAGGCTTTGAGGAGgttaagttttgtttttagggGTAAGCCCAGGAATGGAAGTTTGGGAAATTTGAGAGTTATAAAGGAGATAGGCAGTGGAACTGTAGAACAGAAGCATCACCAAAAGATACAAAGATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208281 lncRNA upstream 8204 4694919 ~ 4729047 (+) True G175988
TU208270 lncRNA upstream 71899 4654967 ~ 4665352 (+) True G175982
TU208224 lncRNA upstream 92053 4644585 ~ 4645198 (+) False ano1a
TU208223 lncRNA upstream 92233 4644585 ~ 4645018 (+) False ano1a
XR_004579122.1 lncRNA upstream 153420 4578357 ~ 4583831 (+) True LOC117598446
TU208292 lncRNA downstream 48076 4787742 ~ 4860943 (+) True G175999
TU208304 lncRNA downstream 73846 4813512 ~ 4838371 (+) True G176008
TU208344 lncRNA downstream 153476 4893142 ~ 4893357 (+) True G176041
TU208361 lncRNA downstream 172412 4912078 ~ 4960526 (+) False G176056
TU208360 lncRNA downstream 177109 4916775 ~ 4922054 (+) False G176056
XM_026930739.2 mRNA upstream 847 4730499 ~ 4736404 (+) True rps17
XM_026930608.2 mRNA upstream 11501 4692533 ~ 4725750 (+) True csnk1g1
XM_026930609.2 mRNA upstream 11501 4692533 ~ 4725750 (+) False csnk1g1
XM_026930359.2 mRNA upstream 86159 4647397 ~ 4651092 (+) True fadd
XM_026930514.2 mRNA upstream 92228 4613406 ~ 4645023 (+) True ano1a
XM_026930338.2 mRNA downstream 293573 5033239 ~ 5035405 (+) True senp8
XM_026930743.2 mRNA downstream 568355 5308021 ~ 5310159 (+) True rxfp3.3a2
XM_026930920.2 mRNA downstream 574801 5314467 ~ 5355290 (+) True drd4b
XM_034308471.1 mRNA downstream 603136 5342802 ~ 5355290 (+) False drd4b
XM_026930350.2 mRNA downstream 627195 5366861 ~ 5377891 (+) True LOC113536448
TU208265 other upstream 76115 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 440004 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 1078975 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2658624 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2676968 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 2382719 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 2528218 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2862560 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 3503756 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 3505286 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile