RNA id: TU208360


Basic Information

Item Value
RNA id TU208360
length 1706
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G176056
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4912078 ~ 4960526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaagaacagtgAGCAGAGCTGTTTCTCTGCCAGTGGGGTTTAGCAGACAACGCCTTCGATTGCATGGACTTACTCCAATCGAGTTGTGTGTCATGTTAATAATATGATAGTTACACGGTAACAGATTGTAATCAGAATTTTACAGCTGGCATTTGATAAAGACAGCAGATTCTTCGAGGACAATACTGCAATACTGCAAATATAATCAAAATCTGTAACATTGGTGTGCATCACATACTGGGGTGAGCATAAGTTTGTCTTCATATAGGGGACTAAACAGTGTGGGTTAATGAgagagaacagtgtgtgtgtgtgtgtgtgtgtgagtactgGCCGGCTTCGGCAAACGCTGCACAGGCAACTTTAGTAACATGATCAGTGATTTGAGCAAACAGTCACATGCTGTCTGTGTACTAAATGCTTTAGTCAACAATCAGATGACGCGGAtgtaaaaaggaaaacagaggGACAACAGAACGGATGGATGGCTGTTAGGAGGTTACTGATACAGTAGGCTGTGAGTTTTAAACAGTCTTCATCCAGCCAGGATCCTCTGGCTTTAAAACACTAGCAGACTTGGTCCCTTCGTAGCCGAGATTCCCAtccaatcaaaaacaaaaagcagcgAAAAACTTCAAAAATGTCAAAGTGGTtttcacataatcatccacacacacacacacacagccgctGTCCCACGTTACTTTCCCAAGTGTTCATAACAGGCAGAAAGATAAATATAAGGATTTAACAACCCAGAAAATCACTGGTGTTCCAgctttgtacattttatatcacacaatatatttatagagagatttatatatatatttatatataccatgtaattaaaatttattaaataggCCGGGGAGtgaaatacatacacataattATAGAGCACGCTGCTTAACATGGTTATAAAGTGTAAACTTCAAAAGCAGCCAATGGTTTAGCTTGAGTTCATGGAGTCTGCACTATGAATGGCCTTGTCTCCTGGCTGAGGAAAGCCGCCTGCAGCCgagcaaacttttttttccacccatcACATTATCTTTCCCCGTCCTCCTTCTGACTGTGTTCATCTCTAATCTGTGactcaaaaacagaaaagatcaGTCTGGGATCGGACCCTTTTTGCCAGCTGAGTTTCTCCAACACGCTTCTTCTGCCTCTTTATGTCCATGGCACTTAGGGGCTGTTCTGGTGGCGCCGAGGAGGTAGCCTGGGGAGCTGAGGAATGAGCTAATAAGGGAAGACAAGCAGCTTCTTCACACCATGAACTCATTGGTGCCGTATAACACTAGCTGCTGTGCCTGAAGGTCCGGGTCTCTGTTGTGCCCCTGGTCCTCTGGGGGTCTCTGGGGAGAGTACTTGGCATTGCGCAGCTTCTGCTTGCTTTTCTCAGGATTGAAGGTGCCTCGGCTGCTGTAGTGGAGCCTCTCATCGCCGTCCTGCTCGGCTGTGTCCTGGCTGGACGGAGGCAATTTGGATCGGAGCCGGAAGCGGCGGGACGGAGCAGAAGGCTGCGGGCAGGATGAGGAGACGGAGGACACGGTGGAGCTGGAATCCACAGAGTCGAGCGAGTCAGGTTGTCTCTGTAGTGTCCGCCTGCTTTTCCCCTGGGATTTCTTGGGCCGAGTGGCAGCTGACGTGGGGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208344 lncRNA upstream 23418 4893142 ~ 4893357 (+) True G176041
TU208292 lncRNA upstream 55832 4787742 ~ 4860943 (+) True G175999
TU208304 lncRNA upstream 78404 4813512 ~ 4838371 (+) True G176008
TU208284 lncRNA upstream 177109 4737251 ~ 4739666 (+) True G175991
TU208281 lncRNA upstream 187728 4694919 ~ 4729047 (+) True G175988
TU208784 lncRNA downstream 498833 5420887 ~ 5424095 (+) True G176384
TU208802 lncRNA downstream 549758 5471812 ~ 5568100 (+) True G176401
TU208808 lncRNA downstream 583716 5505770 ~ 5509854 (+) True G176406
TU208838 lncRNA downstream 680602 5602656 ~ 5614328 (+) True G176430
TU208878 lncRNA downstream 755152 5677206 ~ 5690860 (+) True G176469
XM_026930739.2 mRNA upstream 180371 4730499 ~ 4736404 (+) True rps17
XM_026930608.2 mRNA upstream 191025 4692533 ~ 4725750 (+) True csnk1g1
XM_026930609.2 mRNA upstream 191025 4692533 ~ 4725750 (+) False csnk1g1
XM_026930359.2 mRNA upstream 265683 4647397 ~ 4651092 (+) True fadd
XM_026930514.2 mRNA upstream 271752 4613406 ~ 4645023 (+) True ano1a
XM_026930338.2 mRNA downstream 111185 5033239 ~ 5035405 (+) True senp8
XM_026930743.2 mRNA downstream 385967 5308021 ~ 5310159 (+) True rxfp3.3a2
XM_026930920.2 mRNA downstream 392413 5314467 ~ 5355290 (+) True drd4b
XM_034308471.1 mRNA downstream 420748 5342802 ~ 5355290 (+) False drd4b
XM_026930350.2 mRNA downstream 444807 5366861 ~ 5377891 (+) True LOC113536448
TU208265 other upstream 255639 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 619528 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 1258499 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2838148 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2856492 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 2200331 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 2345830 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2680172 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 3321368 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 3322898 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile