RNA id: XM_034308425.1


Basic Information

Item Value
RNA id XM_034308425.1
length 2148
RNA type mRNA
GC content 0.50
exon number 14
gene id trip4
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5139610 ~ 5196818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCACACTATCAGCACTAGCTAGCCGCGGAGGGAAACTGCTAGTTTCGTTTCATCTTCTAAAACAAAACTTCTTCACTAAATTAGTGATAATGTCGGAATCTTTGCATCGCTGGTGCGTGGAGCAGTTAAACAGCCAGTTTGGCTTGGAAGCCAGTGATGACATTGTTCAGTACATCCTGTCCATCAGTAATGTGGATGAGGTTGTGGAGTATGTTGGTGATCTTCTGCAGGGAACTGAAGGGAAGAAGAAGGAGTTTCTTGACGAGTTGCTGGAGAGATTGCGACGCTGTAAGAAACAGCAGGACAGAGAGCCAGAAGTGATCCTCATGAGAACAGGTGAGTGAGATGGCCACTCACCTTCATTTTGTTCTTTGatcaactgtttttttaaacaaactgctTCTACAGAGGGTCCAGACACAACAAAAGACACGCAGAAGAAAAAACGGAAAGGACGGAACAAACAAGAAGTGGTCTCAATCAGTCAGCCTGAGCCCGAGCCGGAGATTGTAAGAACTCCCATTGACCtgatgaagGCACAAgagaacagcagcagctcttccGCCactaagaagaagaacaaattTGTGAATTTATATGCCAAAGAGGGTCAGGATAGACTTGCTGTGCTGCTGCCTGGACGCCATTCCTGCGACTGCTTAGCTCAGAAGCACAAACTGATTAACAACTGCCTGACCTGTGGTCGGATTGTGTGCGAGCAGGAAGGCTCTGGCCCGTGTTTCTTCTGTGGCAGTCTGGTATGTACTACAGAAGAGCAAGAGATTTTGCAGCGGGACTCGAACAAAAGTCAGAAACTCCGTAAGAAACTCATGGGagATCACATCGTATCTGAGGGAGATAAAGACTACCTGCCCCACCAGGAGGCCAGGATGAAGGCAGGCTTGGAGAAAGCCATTCAGCACAAAGATAAACTGCTGGAGTTTGACAAGAACAGtttacGAGGAACTCAGGTGTTGGGAGCTTATTTCGCCGACTCCAACCAGTGGCTGTCCCCAAGACCGCAAGATCAGGAGCTTCATGACTTCCGCAAAGCTGGTAGACGAGTTCTTGAGGAAGGAGAAAACCTGACTCAGTATTATAACAAGTATGATGAGACCGTCAAGGCCATCAACACCGGGACTCTCATCCAAACCCCGAAGAGCTCGGCTCCAGCTGGCCGTCAATACCTCAGGGAGCTCGTCAACCCAAATATTCAGCAGGCTGCACCTCAGtgGGTGGATGTAGGTGGTGGCGATATCTCTCACAAGTCTAAATCGCAGGGCACTGAGCAGAAAGCAGAGCGCTCCAGACTGAGGATTCAGGACCGGGAGTTGCAGGAAATGGTGGACGGAGGCTGGTGTCTCAGCATGCACCAGCCCTGGGCCTCACTCCTTACCTGCGGCATAAAGAGAGTGGAGGGCAGGACCTGGTACTCCTCACACAGAGGACGTCTGTGGATCGCTGCTGCAGCCAAAAGGCCCACGCCTCAGGAGATTGCGCAGGTAGAGGGCATGTATCGCCAGATCTATAAACAAGATCCGCACTTTCCTAAAGACTATCCTACAGGCTGCCTGCTCGGCTGTGTCAACATGACGGACTGCCTCTCCCAGGAGCAGTTCAGGGAgcagtATCCTCACAACAGCGACGAGTCCGCCTCTCCATTCGTCTTCATTTGCACCAACCCCCAGGAGCTGCTGGTGAAATTCCCCATGAAAGGGAAACACAAGATCTCCATGTTTACTATTTACGCTGGGAGTTCCGGTTGCAGCCACCTCCGTCGAGGGTCAGAGCTCCCAGAGGGATAATCCACAGCCTGATCTGCTCGGCTCTGCTGTCTTTGTGCTACGGAGAGGGAGGATGGAAGACGGAGGACTGGGGGGAGGGGATGGGCCGAGCTCTCATAAACACTCCACTCACACTCCTCTCCCCTATCCCCATGTATGGACTAGTCTTTTCTCTGCACAAGAGGCTCGCTGAGCTCATGTTTACCCTGTAACATCCATAGTACTGAGGGTACTCTCAGGCAGGAACACATTGtcaggttttttattttttggaagtGCTTCAAAATGTCAAACCATATCACCTAAATTACAATGACAggtacagttttacagtttgcGTAGAGGATTAATAAAGAGCGAAG

Function

GO: NA

KEGG:

id description
K23398 TRIP4; activating signal cointegrator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208726 lncRNA downstream 44593 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 310720 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 317168 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 421445 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 525076 4630348 ~ 4632785 (-) True G175967
TU208744 lncRNA upstream 107797 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 435009 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 886011 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 975381 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 987518 6184335 ~ 6188288 (-) True G176832
XM_026930779.2 mRNA downstream 24311 5081652 ~ 5133550 (-) True znf609b
XM_026930658.2 mRNA downstream 83559 5047351 ~ 5074302 (-) True gramd2aa
XM_034308867.1 mRNA downstream 90370 5050059 ~ 5067491 (-) False gramd2aa
XM_026930656.2 mRNA downstream 90375 5047351 ~ 5067486 (-) False gramd2aa
XM_026930655.2 mRNA downstream 90377 5047351 ~ 5067484 (-) False gramd2aa
XM_026930897.2 mRNA upstream 2326 5199143 ~ 5220239 (-) True chrna7a
XM_026930601.2 mRNA upstream 32509 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA upstream 32509 5229326 ~ 5302350 (-) False LOC113536575
XM_026930390.2 mRNA upstream 121535 5318352 ~ 5325458 (-) False cdhr5a
XM_026930389.2 mRNA upstream 121535 5318352 ~ 5325458 (-) True cdhr5a
TU208693 other downstream 76966 5079817 ~ 5080895 (-) True G176307
XR_003403708.1 other downstream 1057435 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 1058010 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 1061091 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 1062599 4095207 ~ 4095262 (-) True LOC113536799
trnai-uau_1 other upstream 93685 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 117345 5314162 ~ 5314254 (-) True trnai-uau_2
TU209010 other upstream 499641 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 499641 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2284632 7481449 ~ 7483958 (-) False si:dkey-56d12.4

Expression Profile