RNA id: TU208726


Basic Information

Item Value
RNA id TU208726
length 3110
lncRNA type intronic
GC content 0.40
exon number 2
gene id G176336
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5110114 ~ 5113268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAATTTGAACcaatagaattgagaaaatctgaaTTCAGATGTTGCTTGTCGTGTTTTAGCTTGCCACTgcattgaaggaaaaaaaaaatgtctattgCGTTGCATGAGTGCAAAACAATGGTAACTGTAGCAGAAGTGTATTGTTTTGTTCCTAACGCTTGGAACAAAGTGGATAGGTGGCGTTTAACAGGCGGGAGGTACCGAGTTTCATTCTCGTCAGTCACCTTCTGGAGAAAAGTGGTTTAAATAGGCTCTGTGGCGAGAGATTGGAGTTTCAGGTTATTCACCCTGCACCATTTTAAATTCCTCAGCATCGCCTACTCTCGCTGATCACAGGCACAGCTCACAAAGTCAGAGTGTGAATCGCAGTCATTAGTGTACAGAGGTGACACTACACAGCCCCCCGCTCCCCGCGACTGGGAGTTGTTAATCTACACAAGGCAAAAAGCGATCGTCTTGTCCTACAGTCTTGCTGCTAAGAGCGCATTAAAGCCAGAGCTGTgatgtattaataataagtgCACAGGCCTCGAGGTGTTGCCACACTGCGTGGAGGAAGAGCACAAACCCGTTGACCTGCAAAGCAAATTCATACGAGTCTAAAACAATATCTTTCAGCGGTGTGATTAATTGTGGAGGTGAGTGCCTGTAAGGGCCTGTAATTATTACCACAGTGTGCGTTTGGTTTCTTAGATACGAGGACAATAAAAGTGCTCAAATTTTCATCAGCTCAAAGACAAACGCTGAACCAGGAATCAGATCTGATTCTGTAGCCTCTCTGCTTGTTTTCCTAAAACTGCacacctgaagtgttttattccttacatgcaAAGCCCACATTCTGTCTCTTCTTTGCAGCTTTGCTTCACAGTTTGCTTGTGCGGTTTGGAGAAGTCCAGTCCTTGAGGTGTATAAAAATTCAGTGAATGTTTTAGAAAAGGTATAAATATTCTGTTGTCAAGGAAACAGTGTTGTGTTTGGACATTGTGCTATTGTGTGTGGTAACACAGCCTAACTAATGCAGATCACATTTCAGTAAACGGGTAATGACCTTTAAAAATAACTCGATATAGAGATTCAGGAAAAGTCTTCAAGTCCGAGTGAAAAGCTCGCAAAGTTGCAGTTTATAATTAGCTTTAGCCTTTGTACTGTTGAAGTCTTCCGAAGCCTTGTTACTACAGTATTCAGTGACTGAGTTcttatttgtcttttatttctccgtctgttgaattctcaaatctgattagtcagaaggtgttgattagttttctctaACAGCGGCTCTGAGAGGAGAGGAATGCCGGCTGTagttcaaatcacaggtctatattaatgcgcttgatCTAATaggctatcgtttctatagtaacaggtcatTCACAGGGGGTTGGATGGTGGACACTGGTGGCTGGTGtcgctactgaagagctctttttaacggTTATAACATATTTGTGTAACTTATCTGGAGCTGTCTAGGCTATCTGGAAGTAATGGCCTGTATAGTTTAATCTGATGGGTTGTGCAGGTTGGgtcctctggtgttcaaacagcgCAGTTGCATTAGACGCaaaattaatagaatgctgatatCGCACATTTCCACGATGCACGTCGTCACATTTTTGCGTCATGGCATCGTTACACACTTACGGCTGACGTTTTGTTGTTTGCTAGCATGGATGTAAGGTCAAAAGAAAACCGATCAACTTGTCAGTCCACACGCAGGGTGTAGTTATCATGTCGTCTCATGCCCCGGAACGAGCTCGAGCACCATTTATACAAGTTAGACACTTTAAAAAGTAGCTGAAATCTCTCAGGCTTGTGATTTAGCTTCAGGCAGTTGTTAACATTTCATATCACAGAACTCTCGGACAGAGAGATTTATTTTCCCTTCATTTGATCAGCTTACGTTCTGACCTTTAGATCAGACATGGTAATTTATAGACGGTCTCATTTTTGGTAAAGGAACTTTTCAGTCTTCCTCTAAATCTTTCtttattccctctctctttcaaaTGGCTGAGCAGTGAAAAGGCCTGAGGTTAACAAGTCTGCTGCTGTGTTTGACATCTTTGTGCAGTGGATTGAATTACTCTTCCCTTCATGAGGTTAGTGTCGCAGGAAAGATTGCTTTAAGAAGATTAGACGGTATTGTGGAAGATTTCTCTGTTGAAATCTCGCCTTTAGTTCATGTTTGCGGGTTCTAGAGCGTTCTTTTTACCCCGTTTTATAATTTGTCCCAATTTAAAAACAGGACTATGTGATTGAAGCAGAGAGGACTCGCGCATTAGGAGTTATTCTGGTGGGATTGATGCACGGATGGATGGAAAGTGGCAGAAAGCTTTCCTCAGCAAGTCTCTGTTAGGACACGTTATTCCAGCTGCATCATGGTGACTGATCAGATGCGAATATGAAGCAAGGTCCTGATTTCAAAAGGcttctttttcttccatttGAGTGAATATAAAACAAAGCTGCAAgatatgttaaaaatgtttggtATAATGATGTTTCACAGCTTTCTGCTCATTTAGTTTCCCTGACGCATCCTCAACATTCACTAATTAGGTCCAAGGACTGATTTTAGGCTTCCTGCCAGGTTTGTTCAGAATATCTGACCCTgaacatttgtcatttttaatttatcacaCATTTCATTAATTTGCCATACTGAACGTAAAATGGCTCTGACTAACAGCTTCCGTGAACATTTAACTAGAGCGGGATATAACGCGAAGATGTAATATCGATATCGTGTTAAACTCCAACAATTCAGTTTTTTGCAttagtatttttataacaacTGTAAACAGCTTGGAAGCAGCAGATTAGATTCAGATTGTAAAATGTTGCTTTTTATTGTCTGTTTACTTTCGTAGACTTGTTCACTGGCGTGTATATCATGCATCATAGAAGCGTatcgtgatgtgatatttttgtcatatcagcCACCCATATGTTAGAcatttgatattaaaatgtaGCAGAAAGTAGGGCTGGGCAATTTGATCATGTGATaccaatatcatgataaattatgtaacAATACACTTTTGTTGTGATGTGATATGATTtcagaagcagctgatttgacgATAAAATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208332 lncRNA downstream 262973 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 269421 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 373698 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 477329 4630348 ~ 4632785 (-) True G175967
TU208239 lncRNA downstream 487127 4622128 ~ 4622987 (-) True G175963
TU208744 lncRNA upstream 191346 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 518558 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 969560 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 1058930 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 1071067 6184335 ~ 6188288 (-) True G176832
XM_026930658.2 mRNA downstream 35812 5047351 ~ 5074302 (-) True gramd2aa
XM_034308867.1 mRNA downstream 42623 5050059 ~ 5067491 (-) False gramd2aa
XM_026930656.2 mRNA downstream 42628 5047351 ~ 5067486 (-) False gramd2aa
XM_026930655.2 mRNA downstream 42630 5047351 ~ 5067484 (-) False gramd2aa
XM_026930659.2 mRNA downstream 42634 5047351 ~ 5067480 (-) False gramd2aa
XM_034308425.1 mRNA upstream 44593 5157861 ~ 5196817 (-) True trip4
XM_026930897.2 mRNA upstream 85875 5199143 ~ 5220239 (-) True chrna7a
XM_026930601.2 mRNA upstream 116058 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA upstream 116058 5229326 ~ 5302350 (-) False LOC113536575
XM_026930390.2 mRNA upstream 205084 5318352 ~ 5325458 (-) False cdhr5a
TU208693 other downstream 29219 5079817 ~ 5080895 (-) True G176307
XR_003403708.1 other downstream 1009688 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 1010263 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 1013344 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 1014852 4095207 ~ 4095262 (-) True LOC113536799
TU208689 other upstream 26342 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 78696 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 177234 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 200894 5314162 ~ 5314254 (-) True trnai-uau_2
TU209010 other upstream 583190 5696458 ~ 5708265 (-) True LOC113536561

Expression Profile