RNA id: TU208744


Basic Information

Item Value
RNA id TU208744
length 470
lncRNA type read_through
GC content 0.35
exon number 2
gene id G176354
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5304614 ~ 5407099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgaTCCTAAGTGTCCGTATCATATTTAGATTAATTGGGCTTAATTTAGTTCGCTGGCCTACATCATGCTCATGGCTAGGCTTAAATTAGGTCCCATAAGTGATCCAGTCTCTCAATAGTAGCACAGCTGTCATTATTTATCCAAAGTTAAAAATACACACCCACATGTCAGACTGGTTAAAAAGTATCTCTTATTTAATATATCATATTTTCAACAGATCGCAGAAAAGCCTCCAtacccaataataataataatactataattTAGAATTTGCACTCATTTCAGCAGGGCAAATTAACTGACCATGACAATCTTTCCAGCATACAATGCAACCTGGATCCTGAGCCCACAGCAGTCTTGTAGAGCCTGAGAGTCACAGGGAAAGAGCAGGCATTCTTTCCCAACCACAATATATAATCACTTATAattctgtaattttttttttttttttttttttttttttaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208726 lncRNA downstream 191346 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 457473 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 463921 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 568198 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 671829 4630348 ~ 4632785 (-) True G175967
TU208989 lncRNA upstream 224727 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 675729 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 765099 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 777236 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 853698 6260797 ~ 6261240 (-) True G176855
XM_026930601.2 mRNA downstream 2263 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA downstream 2264 5229326 ~ 5302350 (-) False LOC113536575
XM_026930897.2 mRNA downstream 84375 5199143 ~ 5220239 (-) True chrna7a
XM_034308425.1 mRNA downstream 107797 5157861 ~ 5196817 (-) True trip4
XM_026930779.2 mRNA downstream 171064 5081652 ~ 5133550 (-) True znf609b
XM_026930910.2 mRNA upstream 497 5407596 ~ 5418681 (-) True LOC113536772
XM_034308710.1 mRNA upstream 497 5407596 ~ 5415705 (-) False LOC113536772
XM_026930560.2 mRNA upstream 12897 5419996 ~ 5446722 (-) False nqo1
XM_034308721.1 mRNA upstream 12897 5419996 ~ 5446719 (-) False nqo1
XM_034308720.1 mRNA upstream 12897 5419996 ~ 5445156 (-) True nqo1
trnai-uau_1 other downstream 14020 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 107796 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 114092 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 223719 5079817 ~ 5080895 (-) True G176307
XR_003403708.1 other downstream 1204188 4100371 ~ 4100426 (-) True LOC113536798
TU209010 other upstream 289359 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 289359 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2074350 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2173335 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 2173335 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile