RNA id: TU208989


Basic Information

Item Value
RNA id TU208989
length 488
lncRNA type read_through
GC content 0.38
exon number 2
gene id G176556
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5631826 ~ 5715020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaaaccatgcattaagagccggggggtgaaacattttttgaatttgaagatcagggtaaatttaacttattttgtcttctgggaaacatgtaactatcttctgtagcctctgaagggcagtactaaatgacaaaatatgatatttaggcaaaataagaaaaatgtacacacctccattctgttcaaaagttttcaccccccggctcttaatgcatggtttttccttctggagcatcagtgagcgtttgaaccttctgtaatagttgcatatgagtccctcagttgtcctcagtgtcaaaagatggatctcaaaatcatacagtcattgttggaaagggttcaaatacacaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcaggcagtttaactgttcaggacaaacaagggactcttgaacaactatcactaaacaaaaaacacagctgtggatcattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208744 lncRNA downstream 224727 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 518558 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 784685 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 791133 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 895410 4732382 ~ 4736416 (-) True G176015
TU209305 lncRNA upstream 367808 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 457178 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 469315 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 545777 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 642554 6357574 ~ 6358087 (-) True G176938
XM_026930627.2 mRNA downstream 58650 5566660 ~ 5573176 (-) True ist1
XM_034308844.1 mRNA downstream 59064 5566660 ~ 5572762 (-) False ist1
XM_034308845.1 mRNA downstream 59074 5566660 ~ 5572752 (-) False ist1
XM_034308846.1 mRNA downstream 59097 5566660 ~ 5572729 (-) False ist1
XM_034308847.1 mRNA downstream 59102 5566660 ~ 5572724 (-) False ist1
XM_026930273.2 mRNA upstream 58537 5773557 ~ 5781153 (-) True LOC113536391
XM_026930735.2 mRNA upstream 66205 5781225 ~ 5786544 (-) True plaat1
XM_026930587.2 mRNA upstream 115731 5830751 ~ 5843843 (-) True srsf11
XM_026930588.2 mRNA upstream 115731 5830751 ~ 5838279 (-) False srsf11
XM_026930734.2 mRNA upstream 139357 5854377 ~ 5858326 (-) True rbbp9
trnai-uau_2 other downstream 317572 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 341232 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 435008 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 441304 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 550931 5079817 ~ 5080895 (-) True G176307
TU210154 other upstream 1766429 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1865414 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1865414 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1865414 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1865414 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile