RNA id: TU209010


Basic Information

Item Value
RNA id TU209010
length 2983
RNA type TUCP
GC content 0.43
exon number 8
gene id LOC113536561
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5696380 ~ 5708304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATTGGTTCCGTTTCCATCTGTCAGTCTGTGACGTTCTTTCCAGAGGACAGTGTGTTTGGGTTCTGTGAGATGTCAAGATACAGTCGGCACGGAGGAGAGACTAAAGTTTATGTGGGGAACCTGGGCACTGGTGCAGGGAAAGGCGAACTCGAGCGGGCTTTCGGTTATTACGGGCCTTTGAGAACTGTGTGGATTGCCAGAAACCCTCCAGGATTTGCCTTTGTGGAGTTTGATGATCCCAGAGATGCTGAGGATGCCGTCCGTGGCCTCGATGGCAAAGTGATCTGCGGAACCCGTGTGCGTGTAGAGTTATCAACAGGTATGCCGCGCCGCTCCCGTTACGACCGCCCACCCACTCGGCGCCCCTTCGACCCTAACGACCGTTGCTATGAGTGCGGAGAGAAGGGACATTACGCGTACGACTGTCACCGCTACAGTCGCCGCAGACGGAGCAGGTAAAGAACCGCCAAAGCAACCACCACCAATTCAACACCTAcacacattaatgttaatgaataGTCAGTAAGTAATACAgaacatacattacatacaatgtgtaatgtgttagtTAATCTTCAGAAAGACTGCTTTATGCAGATATTCTGCATGTTGgtgtgttaatgtaaatgtaaatacagtctCAGATTTTCTCTACACTGTATTTCCCTTGAGCTAGGTTCTCACACAGGAGTGTCTACGTgtctctttattgtttaaaattctGATGTTGCTCTCATTTTCTCCTTGTTTGGCTcctgtatatacatatagtgGTCGACCGATTGTTTTATAAAGGGCTGACATTTAGACATTAATGAGGATATTTAGAGATTAATGAGGCAGATGGCATGTGGccaatattaaattttaattaaatacctTGTAAGAAATGAGAATGacactatttaaatgtattagTCATTAATGTTATGACTTAAACAGCCCTATTAAACATGGAACAATTTTAGACCTATCCCACATCTACAAGCTTCCCATGATCATAAGCACaaaccattttttaattaagttaCCTGTTTGGAGTCAACATTccttttacttacttactgacttgcttgcttgcttatttatttatttattgattatttgattatttggaAAACCAGTAATCTATAGGGATGGGTGTTATGGTAAAAAACATTTCTTCTCAACGTTTTCTGTCTAATCTAAATGGAAATAAGGCCTAAAGTCTGCCTTGGGTGTTAAATATAAAGAGGCTGTGACTTTTCAGGATGGCCAACCAGTCAGGAGCTCACTTATATCACTATATCACCAAGCCAGTGTATCGGTCAACCACTATATCCATATATAGCTATAtaaatgttgtttgttttactttcaAGGTTTATATAATGCTCAAATGTTGTGTGCGATTTTATTTAATGACTCACCTGGTCAAAACCTTTCAGGTTTCATCGTTTGATTCAGAGTGTCACGACCCTTTACGATTTCATGAATCTTCTAGCAAATGCCACACTTACGGTCACCTGCTTTGACCAGGGCGTGACCAGCCAGACCCTCTCTAAGTCTCCTGCCACTTCTACCTGCAGCTAATCGTTTCATTCGGGGCacataagcgtgtgtgtgtgtgtgtgcgtgtgccccCTCCTCCCCCAACTCCAAACCCAAGTGATCAGCAATCTGAGCCAATTTGACTATCAATTCGGGCCCACGCTTTTGCTAACGAGAGCATCGAGACCTCGCCAGACAAAGCACTTCGCACACTTCTATCAAGTCTCAATCAAGCGATTTGGCTGTCAGTGCGATCATCGTTAGAAAGCGAAGAAAACGACTAGATGCAGAGGTCGACTGATGATAGATACTTCTAGATCGCCTAGATCTGCTAGACCTCGGTTCCAAAGAGGGTCGACCTGCAAACTTGCAAGGTTTATTTTAAGTACCAATTaatgtgtctttctctctctcttttttttttatttatttttttttaaatttcctttgCCTGAAATTAGTCAAGCGTAATGTGTAGTGTCATAAGCTGTCTTCACTGTTTTTTGGTTAAGCTTGAGAAAGACCTACTTTATGCAGGGTTCCTGTAAAAAGTTGACTGCTGTAAGTAATGTAGTGCTAAAGTGAATTACTGTACCTTTTTCCGTTCATGCTAGGTAAGGCCAGTGGCAGAGGTGCAGAATGGTGTAAGCAGATGTAGGAAGAGGTGCAGGGACAGTTTCAGAGACAGAAATAATGTCTGAATGTCTTACTCACTGTTTCTCTGTAGAGTCAGTACTtaaagtgttttctttctcattgCATCCTTTCGCCCATGCCTCCATCTCTGCGCCCTTGTTCGTGGATTGGACAGGTCTCGTTCTCGCTCCCGCTCTCGTGGAAGGAGGTATTCTCGTTCCCACTCTCGCAGCCGGAGCCGAGGCAGGAGGTCGAGGTCCTTCTCTCCGCGCCGTTCCCGCAGGCTCTCCGCGGAGGTCCAGGTCTGGCACACCCAGAAGGTCCAGGTCTAGATCACGATCCAGATCTCGCTCTCGCTCTGCCTCTCATCCGAGGAGCAGATCAGGCTCTGTTGGGAGATCCAGGTCTGGTTCTGCAGCCAGGAGCCCTGGCAAATCTAGAGCATCACCTCAAAAACAAAGtcGCTCTCCTTCTCAAAGCCCCGGCAGAAGCAAGAGCCCAGAACGAGACGACTGAGGATCCTTCAgctatcttttctttctttcttatctttctctctatcaTTGTTTGCAAGTCagtttgaattaaatttttctttttttttccccttcttgtTTACATGACCAATATGGTCATTGTTTACTTCAGTACAGGTAAAtcagaaagataaagaaattgTGTGTTGCTTTATATTCAATAGTTGAGATATCAGGAATGACcttttgtgtgtggtgtttgtttatagaagtaaGAAATAATTTTATCATTGTGTATTTCTTATTGAATACAGTAGCTGGTGTTTACAGTACAGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208744 lncRNA downstream 289359 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 583190 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 849317 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 855765 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 960042 4732382 ~ 4736416 (-) True G176015
TU209305 lncRNA upstream 374563 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 463933 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 476070 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 552532 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 649309 6357574 ~ 6358087 (-) True G176938
XM_026930542.2 mRNA downstream 31777 5591074 ~ 5664681 (-) True LOC113536546
XM_026930627.2 mRNA downstream 123282 5566660 ~ 5573176 (-) True ist1
XM_034308844.1 mRNA downstream 123696 5566660 ~ 5572762 (-) False ist1
XM_034308845.1 mRNA downstream 123706 5566660 ~ 5572752 (-) False ist1
XM_034308846.1 mRNA downstream 123729 5566660 ~ 5572729 (-) False ist1
XM_034308690.1 mRNA upstream 4183 5712448 ~ 5760722 (-) True sos1
XM_034308691.1 mRNA upstream 4183 5712448 ~ 5760721 (-) False sos1
XM_026930273.2 mRNA upstream 65292 5773557 ~ 5781153 (-) True LOC113536391
XM_026930735.2 mRNA upstream 72960 5781225 ~ 5786544 (-) True plaat1
XM_026930587.2 mRNA upstream 122486 5830751 ~ 5843843 (-) True srsf11
trnai-uau_2 other downstream 382204 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 405864 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 499640 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 505936 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 615563 5079817 ~ 5080895 (-) True G176307
TU210154 other upstream 1773184 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1872169 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1872169 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1872169 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1872169 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile