RNA id: TU209304


Basic Information

Item Value
RNA id TU209304
length 2585
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G176816
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6172198 ~ 6176354 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACATTcattttgaaattaatttttcacatgtagggcatgtggttttatttttttacacgtGTGTCACATATTGTTCACATGGTGTCGTGGAAAAACCTATGCTCAcatctgaaatgtgtgtgattttcgCATAAGGGAAAAACAACACCCAATATCTATTACTGCAGTAATATATCTAcaaatatctgtctgtcttcagCTACATTCTGTATTTATCAAGCTAATTTGCATCATGACAGACAGCTATGTCTTGTATCATACAAGATAGACAATAGCTATGTTAACtaccaaaattaaaaatgattctttcttgtactttaacataataataattaatgataataaaacatATCCAAAGTTTAGATGAGTTTATTAGTCAGAAAATGGCATGCAAAATATATACCtcctatattaaaaataaaagtagagGTAAAATTGGGTTTAAAAAAAGGGTACTGCTACTGCTTAGGtctaaaatattacacaaaattgTTGCTGATtcgccataacattaaaaccactgacaggtaaTCATTAATTATCAGGTTAcattggcacctgtcaaggggtgggatatattagacagcaagtgaacagtcagttcttgaagttgatgtattggaagcaggaaaaatgggcaagcttaAGGATCTGAgtaactttgacaagggccacaTTGATGGGGCCAGATGACTGGGCTAGACAGATTGACGGGGCTAGACAAATTGAagggctagacgactgggtcagagcatctccaaaacggcaggtcttgtgggatgttcccgatatgtagtggttagtacctaccaaaagtagtccaaggaaggacaaccggtgaaccgatGACAGGGTCATGAGCACCCAAGGCTGATTGATGCGTTTggagagcgaaggctagcccgtctggtccgatcccacagaagggCTACTGTtaacacaaattgctgaaaaagattaacactggctatgatagaaaggtgtgagaacacacagagcattgcagtttgctgcatatggggctgctttgctgcagaccagtcagagtgcctatactgacccctgtccaccgccaacagagcctacaatgggcatatgagcatcagaacagGACCATGGAGCAACGGAAGAATGTTgcttggtctgatgaatcacattttcttttacatcatgtggacagccaggtgcatgtgtgtcgcttacctggggatgcactatgggaagaaggcaagccaccGGAGTCAGTGTGATGCGCTGGCCATCTGACaagtaccacctacctaaacattgctgcagaccaagtacaccccttcatggcaacggtattcttaatggcagtggtcttttcagcaggataatgcaccctgccacactgcaaaaattgtccAGGAATGGGTTGCAGAGCATGACTAAGagttcagtgtgttgatttggcctcctaATTCCCCAGATcccaatctgatcaagcatctgtgtgatgtgctggacaaacaagtctgatccatggaggccccaccatgcaacttacaggacttaaaggatctgctgctaatgttttGGTGCCAGGTactacagcacaccttcagaggactcgtggagtccatgcctcgacaggtcagagttgttttggcagcacaagggggatctacacaatattgggcaggtggttttaatgttattgctgaTTGGTATATTTACAGAATACTAAATTTTATTGTCTGTGCAGTGACAATAAAGTAAATTGTATCTTATACACaaatacagttattatttaGATGTCATCTTTGTTAGagtcttttttatttgattagaGTATTTGTGGAGAAAATGTCTGAGATGTGCTGCATCTGTCACCATCAGCCATCTTGGatttaagggccttgctcagtggcccaacagtggcagcttggcagtgctggggattgaacccCCAATCTGAttagtaacccagagccttaaccattgagccaccactgcccagaGGTGGTCGGGAGGTGATTCCCgtattatatacagtcaggtacataaatattagaatattgACCGTTCTAAGTCACACAGTATGTTGGAGTTAAATTaggtaatgtactgtatatgagctcaaagtgcaatGTATTAATTGTTTATGCCTAAAAATCACTGTTTAGAAAagagttttaaaacaaaaacagcccTGTTTCacagtgtttaatatttcagattacTGACAGTACTGCTCGTATTTAAGCTTGGCTCCCAGTTTGGTTCCTGTTAGTTTCTTCTTGAACTCTTCATCCATCTGCTTACTCTGAGCCTCGCTGAAGTGATTCTTCCAGTCTCCTACCTCACCTTTTCCGGAAAAAGACATTGCCAAACTTTCCATGAGAAGTTTTAGAGCTCGACTGCATGGCAGTGAATGTGCTCTCTCCGGCAATCACCTTGACCTGTTCATCTGTCAGAGAGAAGCTGAAGAAGTCTGTGATTTTCTTTACACCCTCAAGTAGGTTCtactttagTTCCTCATAAGTGACAATTAACACATTAGGGTCATCCATGTGTTTCTCCCAGCCCAGGGCGTGGTCAAAATATGAACCCCAGCccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209305 lncRNA downstream 4396 6082828 ~ 6167802 (-) True G176817
TU208989 lncRNA downstream 457178 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 765099 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 1058930 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 1325057 4840748 ~ 4847141 (-) True G176029
TU209329 lncRNA upstream 7981 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 84443 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 181220 6357574 ~ 6358087 (-) True G176938
TU209473 lncRNA upstream 282012 6458366 ~ 6459631 (-) True G176959
TU209512 lncRNA upstream 367645 6543999 ~ 6545070 (-) True G176990
XM_026930304.2 mRNA downstream 62826 6100029 ~ 6109372 (-) False LOC113536415
XM_026930303.2 mRNA downstream 62854 6100029 ~ 6109344 (-) True LOC113536415
XM_034308409.1 mRNA downstream 77420 6085672 ~ 6094778 (-) False LOC113536414
XM_034308408.1 mRNA downstream 77437 6085672 ~ 6094761 (-) True LOC113536414
XM_026930301.2 mRNA downstream 77438 6085672 ~ 6094760 (-) False LOC113536414
XM_026930590.2 mRNA upstream 50740 6227094 ~ 6296876 (-) True LOC113536569
XM_026930872.2 mRNA upstream 181783 6358137 ~ 6461826 (-) True galnt18b
XM_034308556.1 mRNA upstream 379365 6555719 ~ 6567757 (-) True ctr9
XM_034308784.1 mRNA upstream 445550 6621904 ~ 6643123 (-) False ampd3a
XM_034308786.1 mRNA upstream 445550 6621904 ~ 6643116 (-) False ampd3a
TU209010 other downstream 463933 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 463933 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 857944 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 881604 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 975380 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1305095 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1404080 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1404080 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1404080 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1404080 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile