RNA id: TU209305


Basic Information

Item Value
RNA id TU209305
length 315
lncRNA type read_through
GC content 0.51
exon number 2
gene id G176817
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6082828 ~ 6167802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTTGGGATATGCCACCAGCATGACATCATCCTCCCTGGCCTCCAGGTCCTTTAATGCATCTAGGTTCTCCGGTGGGCTCATGATTGTGGAGTAGAGGATCCCATTTCTCTTGTAAAGCTTCTCCTCATCTTTCATATTCATGCCCCGCTCCATGTTGGACTTTATGTTTGCTGCAAAAGTTGGAGCAGACATCTTGTCCCTGCTGCTTCAGGCACGGGGTCTCTTCTACTGCTGGCTGAAGAGTGGTGTGAGAGGACTGTGCGTGCGTGCTTGCTtgcgtgcgtgcatgcatgcgtgtgtgtgagtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208989 lncRNA downstream 367808 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 675729 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 969560 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 1235687 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 1242135 4839988 ~ 4840693 (-) True G176028
TU209304 lncRNA upstream 4396 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 16533 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 92995 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 189772 6357574 ~ 6358087 (-) True G176938
TU209473 lncRNA upstream 290564 6458366 ~ 6459631 (-) True G176959
XM_034308420.1 mRNA downstream 84691 5949048 ~ 5998137 (-) False eml6
XM_034308419.1 mRNA downstream 84691 5949048 ~ 5998137 (-) True eml6
XM_026930297.2 mRNA downstream 153699 5924209 ~ 5929129 (-) True LOC113536410
XM_026930734.2 mRNA downstream 224502 5854377 ~ 5858326 (-) True rbbp9
XM_026930587.2 mRNA downstream 238985 5830751 ~ 5843843 (-) True srsf11
XM_026930590.2 mRNA upstream 59292 6227094 ~ 6296876 (-) True LOC113536569
XM_026930872.2 mRNA upstream 190335 6358137 ~ 6461826 (-) True galnt18b
XM_034308556.1 mRNA upstream 387917 6555719 ~ 6567757 (-) True ctr9
XM_034308784.1 mRNA upstream 454102 6621904 ~ 6643123 (-) False ampd3a
XM_034308786.1 mRNA upstream 454102 6621904 ~ 6643116 (-) False ampd3a
TU209010 other downstream 374563 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 374563 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 768574 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 792234 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 886010 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1313647 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1412632 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1412632 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1412632 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1412632 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile