RNA id: TU209514


Basic Information

Item Value
RNA id TU209514
length 349
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G176992
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6550914 ~ 6551262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtgattaaaaaaaatttaattaaaaaaacaaaaacaaaaaataaacacattaataaaatcaCACCTGCATGAAGTTCTCCCCGGTGATGAGGCCCTCAGTACGCAGTGCGTGGAACAGACTACTGACATGCTCTTTATCCTCATCTGGGCTGTCCAACGAGCACACGATCATCTTACTCAACATCTCTGGCAGGAAGTGTTTAGGCGCCCTCATCTCCCTCACCCCGTTCACAGCGTTGCTGATTTTCTTGCTGCTCAGATATTCCTTAACAATTGTctcctgaaaacaaaaatgatgacGTGTGAAGTGTTTAAGAGAAATTCTTGATCAAAATcgtggacagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209512 lncRNA downstream 5844 6543999 ~ 6545070 (-) True G176990
TU209473 lncRNA downstream 91283 6458366 ~ 6459631 (-) True G176959
TU209451 lncRNA downstream 192827 6357574 ~ 6358087 (-) True G176938
TU209358 lncRNA downstream 289674 6260797 ~ 6261240 (-) True G176855
TU209329 lncRNA downstream 362626 6184335 ~ 6188288 (-) True G176832
TU209513 lncRNA upstream 63 6551325 ~ 6551582 (-) True G176991
XR_004579067.1 lncRNA upstream 27742 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA upstream 29098 6580360 ~ 6589296 (-) True LOC117598400
TU209633 lncRNA upstream 187059 6738321 ~ 6738608 (-) True G177097
TU209925 lncRNA upstream 307277 6858539 ~ 6859489 (-) False LOC113536608
XM_026930872.2 mRNA downstream 89088 6358137 ~ 6461826 (-) True galnt18b
XM_026930590.2 mRNA downstream 254038 6227094 ~ 6296876 (-) True LOC113536569
XM_026930304.2 mRNA downstream 441542 6100029 ~ 6109372 (-) False LOC113536415
XM_026930303.2 mRNA downstream 441570 6100029 ~ 6109344 (-) True LOC113536415
XM_026930301.2 mRNA downstream 456154 6085672 ~ 6094760 (-) False LOC113536414
XM_034308556.1 mRNA upstream 4457 6555719 ~ 6567757 (-) True ctr9
XM_034308784.1 mRNA upstream 70642 6621904 ~ 6643123 (-) False ampd3a
XM_034308786.1 mRNA upstream 70642 6621904 ~ 6643116 (-) False ampd3a
XM_034308783.1 mRNA upstream 70642 6621904 ~ 6643105 (-) False ampd3a
XM_034308782.1 mRNA upstream 70642 6621904 ~ 6643105 (-) True ampd3a
TU209010 other downstream 842649 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 842649 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1236660 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1260320 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1354096 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 930187 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1029172 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1029172 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1029172 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1029172 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile