RNA id: TU209692


Basic Information

Item Value
RNA id TU209692
length 2405
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G177141
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6904969 ~ 6907752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTGGCCACCTGCTCTGAGACCAGcttaattttctttttgatatCCTCAATGAGAAGGTTGAGCTGATTTCGGACAAACTCCAAGCGGTCGATCAgatactctctctcctccagAGAGGCCACCCTGATAACGGTTACAAAGATTATCACAGATGCATCTTGCTGCTTATGAATCTTACGAATATACACAACAGAATACAGATCAACTCTTTATAACAGACATAATGTATGATTGAGATATTAAACTGTGCTCTGAATTTCACACTGGCCTGTTGCAATAAGTTAGTAGATATACAGAACCAACTGTGCCAGAGTGAAACTCAGAAGACAGAACTAAAGAGAGTGGACCCACCTCTTCTCAGCGGCAGCAATGTGGATTTGATCCATGATGCCTTTAACACATTCAGTGATCTGCTTTGCCCTGATTGTGTGCTGCTCAAACTTTGTTTTCACTGCTGACTGCGAGATACACTCCTGCGAGGCCACATACATGTTACTGGGATGAGCGACACTTAAAGGGGTGAGATACTGACCTGCTGCTCTGGCTCGATGACGCGAAAGGACAGCAGCAGGTCTGTACCATCGTAGCATCATGCTTCATCTCGCAGTAactttcagtaaataaaatgcaaaagcaATACATTCAAATCAGGTCaaagagaaaagtaaaaaagactTAAACATCACAAATCACAATAATCTGGAACAGAAATTAAACTATATCAACAACAAAAGAATGAACAGGTACTcaacaaatactgtattttctgAATTATAAGTTGGTCATATTGTGTATGAGGGGCTCCCCGCTAAATTCTGTCTGCTTGAACACATCATTATGCAGCAATGTTTCATGCAATTCGCTTTATaatattgatatggtgataAATTAACTCACAACACACTTTTCTGATATATCGCCAGGATCATCATTATTTTAGGACTCTGATTTGAAGCAGCAGATTAGATGTTAAAATTTAtactaaatctttaaaattgaaaaatttttacattctttaaaaaatgttcctcATTTATGTAGACATTAAATTGTCACTTAATTTAgttcttcacattttttttttaaatccaacactactgttttgctggcagtttgttagcaaacctacaTATCACATCATATAGTGTATgacagaaatgtcttcaagtatcacgtgatatttttgtcatatcacccacccctaaACACTAACAAATGGGAAGCTCACAATTAGGCTTGAgcaaaaatcaaatattttgcTGTATGAGAATTTAAAATCTTACAGTCCAAAAAATACAGTACTCAAAAATCATACAAAGAACATCAAAATAATCCACAAAAGACTGATACATCAAATAGGAAAACACAAGTGTAAAGGTGAACTGAGGAGAAGGGTGTCCTCGCCTTAGCAAATCTAGACTTCAGCAATGAACACACAGATTGACGAAAAAGAGCACATGGGCCTAGGAAAAGGAAATGGCTAGGTGGGAAATAAACTGGCAGAGTAATTAAGCTACACTTCAGCAAAGCACTACAgtgtggaaaggaaaaaaaaaaaaaaaacaactttgcatgtgtgtggtgtACATAAAAAGTTTTGCTTGTGGTGTCAGAAAGCAGTCAAGAAATGATCTGGCAATAATTTATACTTGAAAAGAAGTAAATTCTAATTGATcaattttctgttcatttcaccaatattaaaatgaaaatctttatGTTTTGACTCAACTTTTTATCCCAGTGctacaatattttaatttacattaccTGTAGCTTTAAGAAATCAATTGAAAACGTTTGCCTAAATGTGTTAATTCCTCTGTATTTACACTGAAACATGGTTTACTGTAGACAAGTTCTACAGACGTAAGAGGAAAACCATCAGCTTGTGATAATCCCTATGTTAACTCACTAGAATGTTTAGTGGCTAAGACAGTTTTCAACCGATCATCAATCTGTATTTCAATTCCCTAAACAGCCCTTCTCATCTTAAagaaacattcatttaaaattttcctAAATACTTGATTCTGATAATTAGAGTCAGTGACATGCATggctttcttctttctcttctttcatttttcttacttAGGGGCACCAGACTTAATATGACCAAGgctctagattttttttctattgcttttttaattttaaaatatttttttccagtaaaACTCCACTGCCATCTATATCGTCACGTCTCCCTACTCTAACGCACTTGCTTCAAATCAAACAGCTTCCACAcgatattaatttttttcatcctgaattttttttgttctggtAGTAAACAGACATCATATCCATGGTCGTTTTAGCAATCACTTGCCTCAAACGTCCTCTCAAAGTTCTGGAACTCCTTCAGTCTCTCCTGGAAGCCTTCTGCTAATGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209724 lncRNA upstream 18566 6885578 ~ 6886403 (+) True G177165
XR_003403689.2 lncRNA upstream 29922 6863825 ~ 6875047 (+) True LOC113536609
XR_004579087.1 lncRNA upstream 31911 6870480 ~ 6873058 (+) False LOC113536609
TU209715 lncRNA upstream 44739 6859304 ~ 6860230 (+) True G177159
TU209478 lncRNA upstream 349962 6554594 ~ 6555007 (+) True G176964
TU209744 lncRNA downstream 45891 6953643 ~ 6960207 (+) True G177180
TU209726 lncRNA downstream 52735 6960487 ~ 6961539 (+) True G177166
TU209804 lncRNA downstream 247369 7155121 ~ 7155344 (+) True G177233
TU209856 lncRNA downstream 363763 7271515 ~ 7272538 (+) True G177268
TU209862 lncRNA downstream 371811 7279563 ~ 7279767 (+) True G177274
XM_026930268.2 mRNA upstream 4904 6890188 ~ 6900065 (+) True LOC113536389
XM_026930767.2 mRNA upstream 51328 6851440 ~ 6853641 (+) True LOC113536670
XM_026930607.2 mRNA upstream 73229 6823407 ~ 6831740 (+) True traf3ip2b
XM_026930866.2 mRNA upstream 82856 6820804 ~ 6822113 (+) True LOC113536733
XM_034308913.1 mRNA upstream 83217 6820804 ~ 6821752 (+) False LOC113536733
XM_026930539.2 mRNA downstream 9355 6917107 ~ 6940664 (+) True trappc10
XM_034308708.1 mRNA downstream 9355 6917107 ~ 6940664 (+) False trappc10
XM_034308812.1 mRNA downstream 43342 6951094 ~ 6953455 (+) True LOC117598414
XM_026930300.2 mRNA downstream 150736 7058488 ~ 7075682 (+) True notum1b
XM_026930714.2 mRNA downstream 200571 7108323 ~ 7122257 (+) True tmc8
TU208265 other upstream 2243833 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 2607722 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 3246693 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 4826342 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 4844686 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 214633 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 360132 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 694474 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 1335670 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 1337200 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile