RNA id: TU210062


Basic Information

Item Value
RNA id TU210062
length 2260
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G177448
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7267561 ~ 7271271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCGCTCAAGACTTAAATTTATTGTGGGATGTTCCAACGAGCCACATTGAAAATGCAGAGTCCGAGACAAGGTGGTTTTAATCTGTACAAAAACAAAGTCCCAGTTTACTGGTCCTTCATCTCCTTCAGTCTCTTGATGGCAGACTTGACTGTGACAGCAGACGTTGTTGTATGTCCAGGCACCTCCAGCTACGGTTTTCATGCAGGACCCACAGTGCCAGATGCCAACAGCTCGTCTCTTCATCTTGGtctaaaaaaaagaggagaaaaaaaaccatcagTAATTCTGGATAATCCGGATGTGCATCTTCAGCTTACAatcagttacagtgaaatataatttaagacCTGATAGTAAAGTCAAAAGCACTCATTTTATTCCATCACTCCTGGCAGTAGATACCAAAAATGTTCAACTTGATTCTTGCCTTTGTATTGCACTATATACTCAAATTCAGGCTGTAGTATAGCATGAGCAGATGAGTAAAGAggcataaaatattaaaaaggcaCACTGCAAGAGCCTCTCAAAGAGAACCAAGCTGTAAATACTGCATGCAGATCATAAGCTGTGCATTGTGTTGCCATCAACTGAGGATCTATAAATTGTTCAGGGGATACAAAGACAAAGGTTATAAAGAAAAAGGGCGGACATAAAAGGCATTGGAGAACATTTGTACCCGAGTCAGAATGCAAGACATAACTTTTTAGCTGATATTTAAACTGGTTTCTggattaatatattaacattcaTTTGACTTTTTTGTTACGAGTGACCATGAAAGAACATGTAAAACCCAACACTAAATGTTTTGAtggtataaattaaattttatttgcactCAATTATATTGTGGCTTTAACGTGATCGTAATCAATGCAATGTGCAGGTCAGCTTTCAGCACTGCAGCAGAGGTTTTTGAATAATTAATCGCCTAACAAAACATGAATCAAACCTTTCTTTTTACTCCACGAAGTTCAAGAAAAGGTTAAATGTGACATGCTTTACTGATACTGCATTACAGCTAGTGATTTACTGATCTGAAACGGAGTACCAGACAATATTGGCCATTAACCATAGATCAGTATTCGGTCAGGACTGATGTATTTTATGCTGTGGAAGTGCCTCATACTGAccaacacaaacatgcacaggGCTACAGGATAAGAATTGTTGAAACGCATaccactatcacacacacttcttgcTTGGCCACTAATTCTACCTTCAAACTAGTCAAAAATATCAGCATTACTAGATGAGTCCACATGACCACCACAACAGTGTGCTGACTTCTACACAGAAGCTATTTTTTAAGCTTCAACTTAACAAGTAACAGGCATGTCgagtaaacaaaaaaacgtaATGTCAGTAGAGATATGAATGATGTGTCCAAAGCtgacagggtttttttttttggtaatttggTTAGGCTGACTACAGTTTCAGTTTGTATTCATCAACGCACttcccaaaaaacaaaacacttgaaCACCTATGCCTTCAATCTCACAAGTAGTAACTTCTGATAACGACTGCATACAAGAGGACATCAGTATGCGTCGAAACTCAGAGCTCCTACACTGACATTGtatcaaaaatggaaaaaatgagaTTGGTGAAGCCTGGATTAGTGCATTTAAAAATTCCATCCTGTTCCAGCCTTGCACAAGACCCCTGAGCTCCGACCACGTACCAGCCATGACATCATTTCATCAGTCCTCTTCGGTCACTCACCTTGCCACAGAAGGAGCAGGTGTACTTGGCGTGCTGGCTGATCTCAATCTTTTTCACCATCTTCCTGAGCGAGGCACCATAACGGGTACCATATTTCCCGACAATCCCCACCTTCTTGGTGCGCTTGGCCTGCAGACATTTTAGCAGAAGAGGTGCGAAGCCAAAGAGGGAGGACCAAGTGCGCATGCGCGATTTACCATACACGACCGCGGGGGATTCTGGGATTTCAGAGGACCGACTAATAAGCTGAGAAGGATACTGAAGAAATTGAGACTGCTTTTGTGTTGTGGAGTCTAGCTGTGGACGTTAATAGCGactacaaatgtaaatatcgcaAAGACAGTACTTCAGCatgttgaaaaaatatttaaatattggaaacaaaaacaaagaattgaGACATTTCCCCCTTCCAACACTTTTTAAAGCCAGTGTCTATTTGCAATAGCACTTTTTCTTGGCGTTTGTGTGTTAACTTTCAaattttgccttttcttttgtGTTACTTTTCTCAATTtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579109.1 lncRNA downstream 109940 7156228 ~ 7157621 (-) True LOC117598441
TU210004 lncRNA downstream 128657 7137629 ~ 7138904 (-) True G177404
TU209973 lncRNA downstream 208011 7058532 ~ 7059550 (-) True G177374
TU209925 lncRNA downstream 408072 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 528953 6738321 ~ 6738608 (-) True G177097
TU210074 lncRNA upstream 18614 7289885 ~ 7290092 (-) True G177455
TU210078 lncRNA upstream 21646 7292917 ~ 7293170 (-) True G177459
TU210088 lncRNA upstream 103756 7375027 ~ 7375235 (-) True G177469
TU210110 lncRNA upstream 142696 7413967 ~ 7414185 (-) True G177491
XR_003403681.2 lncRNA upstream 144670 7415941 ~ 7417038 (-) True LOC113536470
XM_026930841.2 mRNA downstream 14968 7248348 ~ 7252593 (-) True cfap410
XM_026930817.2 mRNA downstream 64697 7192255 ~ 7202864 (-) False si:dkey-93h22.8
XM_026930816.2 mRNA downstream 64697 7192255 ~ 7202864 (-) True si:dkey-93h22.8
XM_026930727.2 mRNA downstream 76727 7180208 ~ 7190834 (-) False ogal
XM_034308948.1 mRNA downstream 76735 7180208 ~ 7190826 (-) False ogal
XM_034308645.1 mRNA upstream 25436 7296707 ~ 7354330 (-) True strn
XM_026930513.2 mRNA upstream 25436 7296707 ~ 7354052 (-) False strn
XM_026930318.2 mRNA upstream 163048 7434319 ~ 7437490 (-) True irf2bp2b
XM_026930317.2 mRNA upstream 209151 7480422 ~ 7484117 (-) True si:dkey-56d12.4
XM_026930575.2 mRNA upstream 221230 7492501 ~ 7500900 (-) True rbm34
TU209010 other downstream 1559296 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1559296 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1953307 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1976967 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 2070743 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 210178 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 309163 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 309163 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 309163 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 309163 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU119881 False 228 lncRNA 0.48 3 NC_048566.1 2756316 ~ 2756799 (+)
rainbow trout (Oncorhynchus mykiss) TU2445565 True 998 lncRNA 0.49 5 NC_048592.1 42368244 ~ 42385423 (-)
bowfin (Amia calva) TU162312 False 1519 TUCP 0.40 3 CM030137.1 18555151 ~ 18558174 (+)
bowfin (Amia calva) TU119881 True 234 lncRNA 0.71 1 CM030132.1 4321038 ~ 4321271 (-)
tiger barb (Puntius tetrazona) TU119881 False 943 lncRNA 0.49 3 NC_056709.1 11525058 ~ 11527052 (-)
mexican tetra (Astyanax mexicanus) TU61603 False 434 lncRNA 0.47 4 NC_035901.1 27855844 ~ 27858395 (+)
mexican tetra (Astyanax mexicanus) TU162312 True 365 lncRNA 0.41 2 NC_035910.1 8260986 ~ 8261374 (+)