RNA id: TU210078


Basic Information

Item Value
RNA id TU210078
length 254
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G177459
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7292917 ~ 7293170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catttagatgtgaatatcaggaaatgaaagctgaagttCTGATCTGTTCTCTTGTATTCACCTTTTcaaactcaaactcaaatgtcttcattgtatagcaaaaacaaaagaattgtcTTTGCTGTTCCAGTGCTTTCAGAGGGGGCTGTATATGTGGAAGTGTGGGAAATCCTTTCATGTGGtgaattttttgtatttattactaTTCAAATTTTCCTGAAATGAagcatgtttctcttttgtatgtATCGCTG

Function

GO: NA

KEGG:

id description
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210074 lncRNA downstream 2825 7289885 ~ 7290092 (-) True G177455
TU210062 lncRNA downstream 21646 7267561 ~ 7271271 (-) True G177448
XR_004579109.1 lncRNA downstream 135296 7156228 ~ 7157621 (-) True LOC117598441
TU210004 lncRNA downstream 154013 7137629 ~ 7138904 (-) True G177404
TU209973 lncRNA downstream 233367 7058532 ~ 7059550 (-) True G177374
TU210088 lncRNA upstream 81857 7375027 ~ 7375235 (-) True G177469
TU210110 lncRNA upstream 120797 7413967 ~ 7414185 (-) True G177491
XR_003403681.2 lncRNA upstream 122771 7415941 ~ 7417038 (-) True LOC113536470
TU210159 lncRNA upstream 129853 7423023 ~ 7423276 (-) True G177539
TU210167 lncRNA upstream 147009 7440179 ~ 7440388 (-) True G177547
XM_026930841.2 mRNA downstream 40324 7248348 ~ 7252593 (-) True cfap410
XM_026930817.2 mRNA downstream 90053 7192255 ~ 7202864 (-) False si:dkey-93h22.8
XM_026930816.2 mRNA downstream 90053 7192255 ~ 7202864 (-) True si:dkey-93h22.8
XM_034308948.1 mRNA downstream 102091 7180208 ~ 7190826 (-) False ogal
XM_034308645.1 mRNA upstream 3537 7296707 ~ 7354330 (-) True strn
XM_026930513.2 mRNA upstream 3537 7296707 ~ 7354052 (-) False strn
XM_026930318.2 mRNA upstream 141149 7434319 ~ 7437490 (-) True irf2bp2b
XM_026930317.2 mRNA upstream 187252 7480422 ~ 7484117 (-) True si:dkey-56d12.4
XM_026930575.2 mRNA upstream 199331 7492501 ~ 7500900 (-) True rbm34
TU209010 other downstream 1584652 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1584652 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1978663 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 2002323 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 2096099 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 188279 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 287264 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 287264 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 287264 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 287264 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile