RNA id: TU210207


Basic Information

Item Value
RNA id TU210207
length 2002
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G177580
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7514816 ~ 7516891 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgattttttttattagacagCTGTATGAATTGGACATGATCCCATGTTTCCCACCTCCTCTCCCCAGCTGCATAATCAACACGTACATGGTAACTTTATCTAATGCATAACTGGCGAGTGTGTGAAGCCCCATATGGCGGATGAGGTCAGGAAGGCCAACACACTCCCCAGCAGTGCTGGATCCAGATGGACAGCACCTCAGCATCTTCCCCGATTAGCTTAAAGCTTGTAAACGTGAACATCTTTAAATAGTTCAACAGTTATGAAATTAACACTGTTTCCCATGTACCTCAAGTGTAGGCAAGAAATAAAGACGTGTGCAAGTCTCAATCATGACACACTTATGACTTTCTTACTCTGCACATAGTttagtaatctttttttttttttttttaatatagagaCTCTATCGTGCTCCAAAAAGTTGATTGTGTCACTGGgttcaaatgtttgttttccCATCTGAAACCAGTGGtgcaaacagccaatcagattgcaaccttcaagatcctgaagcttgtggccagacaagtgtacaaaagatatcagactCATTGCGAGCTGTGGGTGGAGCCTCAATTGCTCTGTCAAATCTGAtaacttttgtacatttttctggccacaagcttaaGGATCATGAAGGTTGCAATCTAATTAGCTCCGCCTTTCAGCTTTTGAACACCATGATAACAAGCTTTATGGAGTAAGATATAGTCAATGGACTGACAAAACTTGTCTAAATTCCATCAAGTCATtaaagagttttgtttgaaactGGTCAAAGAAAAAGGTCTGTGGTTGGTTATCTACCGTGTCAGTATAACTGGCTCTTTCTGTGAAGTAGGTGGTTCttggcagtgtttttttttttttttcccaccagaTTATCTAGCGAAAGTTAGGAGTCTAGATTTGTGAGAGACTAGTATAATGCTAAATTGGAGGcttacttgttagcaacatttgtagaaataaagaagaagaaacatgtcttggctgatggACTACATTtgggagagagggaaagtgtgttaatttaatttttggctgtttcTTTTAacctgaaatatgtttttaaaatagtgGCTCTATATCAGCCATTTACTTTACAATTAAAAAGTGGTAATCTAAGAAcaaaattggaaaataattgtAACTATTATATTGATGTAcgtaaataattaatataatgataatatccAGCCCATAACTATCCCACCCCTTCCACCCCACACCCCATATATAGTCATATTAACTTAGGAAAAAAACGTGGCATTTACTTGCTTGCTAAAATGCAGAAGTATGGCTATATTTTGTCTCCACATGACTTAAGACTTTCAAACATGATGCTGTCACTAATCACTTAATTACCACATAACCAGTTAATAATATACTGAAATAAATTTGAAACTATAAAGATTTTAATAATTCAACAATCAACAAGAACCTAGATGCAAAATGGACCAGTTTTGACTTGGACCTTCTTGCCCCGGCTCACGGACCCCTGGACGTCCCTATTGGTCACAGTTTGAAAAGCACCATATTCACTCCTCCTTCCTTCTGCAGTCTATCCCAGCTCTTTGtgctctcttcttcctctcattTTATCCTGAGATCTCCTCCTCTCACAGTTTATATATCCATATCCATGTCTAACttcatttattcctctttcacACATTACTTCATCACATCTGCAGTGTCCCAGGACTTTAGTGATGGGGCGGGGTTTAGCGGCTGAAATGGATCTTCTCTCCCTAATTACAATACGCAATGGTTTTTGTCCTTGAATCATGTGTCACAGGTGTTGCTTTATCCCCGTCTCGTTGACACACCTGCGTGTCCATCATTCAAGCGCTCTCAGATGTTACGGTCTCTCTCGATGCACGTGTCATCCCGGGCATCAGGACAGCGGCAGGTGAAGCCACCCGGCCGCGGCAGACACAAGTGCGAGCAGCCGCCGTTATTGCTCGAGCAGTAGTTCCTTTCAGCTGGAAGAAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210139 lncRNA upstream 56059 7458538 ~ 7458757 (+) True G177520
TU210137 lncRNA upstream 58211 7455553 ~ 7456605 (+) True G177518
TU210136 lncRNA upstream 59346 7455242 ~ 7455470 (+) True G177517
TU210132 lncRNA upstream 65139 7449476 ~ 7449677 (+) True G177513
XR_004579110.1 lncRNA upstream 69529 7443017 ~ 7445287 (+) True LOC117598442
TU210222 lncRNA downstream 30475 7547366 ~ 7547831 (+) True G177594
TU210274 lncRNA downstream 156625 7673516 ~ 7674470 (+) True G177630
TU210272 lncRNA downstream 158974 7675865 ~ 7676699 (+) True G177628
TU210419 lncRNA downstream 299172 7816063 ~ 7816610 (+) True G177751
TU210641 lncRNA downstream 610691 8127582 ~ 8127971 (+) True G177955
XM_026930574.2 mRNA upstream 1027 7501078 ~ 7513789 (+) True tbce
XM_026930576.2 mRNA upstream 22573 7484243 ~ 7492243 (+) True tomm20b
XM_026930387.2 mRNA upstream 152886 7356919 ~ 7361930 (+) True map1lc3c
XM_026930801.2 mRNA upstream 225299 7282097 ~ 7289517 (+) True opn6a
XM_026930879.2 mRNA upstream 235434 7272843 ~ 7279382 (+) True eif4a3
XM_026930639.2 mRNA downstream 36082 7552973 ~ 7561495 (+) True gpr137bb
XM_026930291.2 mRNA downstream 264770 7781661 ~ 7794628 (+) True si:ch211-106j24.1
XM_026930745.2 mRNA downstream 327782 7844673 ~ 7925739 (+) True LOC113536658
XM_026930744.2 mRNA downstream 331595 7848486 ~ 7925739 (+) False LOC113536658
XM_026930748.2 mRNA downstream 331595 7848486 ~ 7925739 (+) False LOC113536658
TU209855 other upstream 243496 7267884 ~ 7271320 (+) False rpl37a
XR_003403680.2 other upstream 383310 7122385 ~ 7131506 (+) False LOC113536390
TU208265 other upstream 2853680 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 3217569 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 3856540 3647370 ~ 3658276 (+) False btbd10b
trnae-cuc_24 other downstream 85335 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 726531 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 728061 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_8 other downstream 731125 8248016 ~ 8248088 (+) True trnar-ucg_8
TU210703 other downstream 736530 8253421 ~ 8270749 (+) True LOC113536578

Expression Profile