RNA id: XR_003403688.2


Basic Information

Item Value
RNA id XR_003403688.2
length 1686
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC113536578
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8253421 ~ 8270750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCGCACCACACGCACGGAAGAGTCCGCTCCAGCCTGAAGCTTACATCGGCCTGTGAAAGGTCAGACAAAGCCACGTGCatcttaaataaaacacaaaaccacGGCTGTGCTGGTTTCATGGGAGGAAATCCCCCATGTTGGAAATAAACTGCCCAGTTCCTGCTCACTGGATCTTAAAGAAACGCCATCCCAGGCTTCGCGGACTTACAGAGGAAAACGCGCCATGGCTGGTGCCATTGACGATCAcgatttcttttatttttggcagTGAATGTTTCAGAAGTACAACACACAGTGCTGGTAACGCATCATGCGCGGCAGTGATCTTGCTTGGCAGACACAGAGAAGACCACTTCGATGTGCCCAACACTCGGGCACTTAACACTTTGCATCCTGAGCACGACAGAAAGGAATATGCACGGCATCATAAAAAGTCTGCTCTTACGAGATGCTCCTCGTTACTTGTGTCGTGTGTGAAGGGGTCGGTTGCTATCTTTGGTTATCTAGCTGTATGAGTGTTTCTCCTCCGTCATAAAGCTAGATAACCGAAAGTAGGAGCGGTCTCCTGTACTGCGCACTGCTCGTGCACTAAAGCACGAGCAGGAAAAATACTGACCACTGCGTGGAGATCTATCATAGGGAAGCTCCTCCTGACCACAGCATTTGCGTGAGAGACCAGACCACCATGCACTGGAACAACACCATGTGCCTCCTCCTTCCATCAACGGAAGCATTCGGTGCCATGTGTGCCCCCCGGAGCAGAGGGCgggagaagagaaaaatgatGTGCAAGAGGCTACAGTTCGTGTGCCAGTGGAGACAAAGAGGCTGCCAGTCGCCACGATCCCCACAGATGCTGAAGATTGGAGCTCTGAATGAGGGGCTGTGCTTTGAGGAAGCCATCTTGATGGAAAGGCTGGCTGCCTGCTTCCTAAAATGGCTGTGTTGGCATGAGgAACTGTTGATGACAACATCGAGCCGACTGGAGCGTATATCCTGTTCCAAAGTCCCTGGGCCACTCTCATATACATCAGCCACTCTGGTCCCTAATATCTAATGACTGCTTCTGACTATCTTGTAGTGGACAATCAAAACAACTAGCAAAGCATGTGATATTAGAAAACTGACATAATACCTTTTTTGCTTCTTGAATAAACGACGTGTCAATCTGTATAAAACTGAACAATTTGTATTTTCTAAGCTGCAAAGGGCAAATGTTAAGTATTTAATGATCGTTTTAGACTGTGCAGAATGCTGGCTAATGAAAATGTGCCTTACTGTGTGAACTGTTTACAGTAAAAATGTAGTTTGCtattaatgacatttaatagACAACTGTGTAGTTAATGAATGTGGGAGTCATTTATGTTGAACCGTTTTAACCATGCCTTCAGTGCTTCATTTTCTctgtgaataaatgaaatgaattcctTTCCATGATGAAAAATTATATCTATTAAAAAACTGTCTTTCAGTTTTACTTGAAATTTCAGTTGAACAAGAAAGCattcttgatttttattttttcataatacATTAGTCATGCATGTGCTAACTACAGCAGAAATGCGGTATAGCTACAACATTACAACAGTGGCTCtattgtttaacacttttttttttttaaatactttaccCAATGTTAGATGCATGAGAATCAATAAACTTGCACAATATAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210698 lncRNA upstream 9779 8243355 ~ 8243648 (+) True trnar-ucg_6
TU210693 lncRNA upstream 39207 8213978 ~ 8214220 (+) True G178001
TU210641 lncRNA upstream 125456 8127582 ~ 8127971 (+) True G177955
TU210419 lncRNA upstream 436817 7816063 ~ 7816610 (+) True G177751
TU210272 lncRNA upstream 576728 7675865 ~ 7676699 (+) True G177628
TU210735 lncRNA downstream 18773 8289523 ~ 8290715 (+) True G178039
TU210743 lncRNA downstream 36557 8307307 ~ 8309518 (+) True G178047
TU210742 lncRNA downstream 39910 8310660 ~ 8312652 (+) True G178046
TU210770 lncRNA downstream 137259 8408009 ~ 8441217 (+) True G178067
TU210809 lncRNA downstream 149437 8420187 ~ 8422600 (+) True G178104
XM_026930723.2 mRNA upstream 11302 8219886 ~ 8242125 (+) True kif7
XM_034308809.1 mRNA upstream 11302 8219958 ~ 8242125 (+) False kif7
XM_034308810.1 mRNA upstream 11302 8219989 ~ 8242125 (+) False kif7
XM_026930274.2 mRNA upstream 55736 8180998 ~ 8197691 (+) True mrps11
XM_026930752.2 mRNA upstream 332955 7848486 ~ 7920472 (+) False LOC113536658
XM_026930281.2 mRNA downstream 201721 8472471 ~ 8477439 (+) True slc39a1
XM_026930280.2 mRNA downstream 210106 8480856 ~ 8487330 (+) True rlbp1a
XM_026930787.2 mRNA downstream 261485 8532235 ~ 8534139 (+) True kbtbd13
XM_026930615.2 mRNA downstream 294530 8565280 ~ 8571168 (+) True spg21
XM_026930802.2 mRNA downstream 361073 8631823 ~ 8701565 (+) True pcsk6
trnar-ucg_8 other upstream 5339 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 8403 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 9933 8243422 ~ 8243494 (+) False trnar-ucg_6
trnae-cuc_24 other upstream 651130 7602226 ~ 7602297 (+) True trnae-cuc_24
TU209855 other upstream 982107 7267884 ~ 7271320 (+) False rpl37a
TU212529 other downstream 2825403 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 2889596 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 2889636 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 2889636 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 3141310 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile