RNA id: TU210961


Basic Information

Item Value
RNA id TU210961
length 220
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G178227
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8593186 ~ 8593405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCTACAAGGTTAACATTCTTAACAAGGAATTGTACTAATAGACGTCCGCCTCACCTAAAATCTTTTCCTCAAAAACATACTTAAATCTACACGTACTCACTATAAGCAACATTGTTAAGCTGTTTAAGCTGATAAATAAACAATCTTGTAAAATATCAGGGAGAATCTGCATTTACTCAGTTAAGTTTGTAAGTCATCATTTATACCAATATCTGCA

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210939 lncRNA downstream 71101 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 269022 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 317826 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 666128 7926293 ~ 7927058 (-) True G177807
TU210390 lncRNA downstream 838168 7707511 ~ 7755018 (-) True G177729
TU211159 lncRNA upstream 117772 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 389813 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 410239 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 593666 9187071 ~ 9189914 (-) True G178673
TU211464 lncRNA upstream 604195 9197600 ~ 9197805 (-) True G178679
XM_026930613.2 mRNA downstream 3834 8572475 ~ 8589352 (-) False ankdd1a
XM_026930614.2 mRNA downstream 3834 8572475 ~ 8589352 (-) True ankdd1a
XM_026930548.2 mRNA downstream 28278 8550368 ~ 8564908 (-) False clpxa
XM_026930546.2 mRNA downstream 28279 8550368 ~ 8564907 (-) True clpxa
XM_026930549.2 mRNA downstream 28280 8550368 ~ 8564906 (-) False clpxa
XM_026930526.2 mRNA upstream 2775 8596180 ~ 8612306 (-) True plekho2
XM_026930411.2 mRNA upstream 214182 8807587 ~ 8924385 (-) True lrrk1
XM_026930283.2 mRNA upstream 333407 8926812 ~ 8950809 (-) True aldh1a3
XM_026930818.2 mRNA upstream 389777 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA upstream 389777 8983182 ~ 8994947 (-) True asb7
trnar-acg_8 other downstream 345424 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 346411 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 348465 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 350383 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 351008 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 297222 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 929011 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1220487 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2650570 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2815687 11409092 ~ 11415440 (-) False G179803

Expression Profile