RNA id: TU210999


Basic Information

Item Value
RNA id TU210999
length 1316
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G178260
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8807605 ~ 8808944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agttttattcaaatttacAATACAGTAACAATCTATTTACACATGCAGACATATAGACCATAATAAATATCATACAGTTAATTGTTTACAAAGTTctattacatatttacaatagTAAAAGCTAACATGCTGGTATTTCTGCTAGTGTAGAGGTATTTAAAGAATGTTCTGACAAAAGAATGTATGCAATTTTGTAATCCAAATGTAGTAAATCAGCTAAGTCATGTTTGGGGTTCAACAtttgcttttttcagttttgcactggagctccACTATAGCTatcttttctgtaaaatatatgCCATGTTCAAAGCTTTGCTTCAATAACAATGTCATTGTTAAGATACATAATTTCACTATGAGTAAAagattttgtaaaataacattTCAGGTGACAAACtaaataacactttatttatcccaaagCTCTGTTATGCTCTAGGGGTATTATTTTGGTGGCATGGTTTAGGCTGTCCCCCACTTGTCCTCTTAGAAGAAAGCGTAACTGCAAATCAGtgcaaagttcttctgactgctGCCTTTTATCCTATGATGTAACATTTCTATCGTgttgggagtggtctcttccaggatatcttcacccccatccacagggctaAAGAGCTCACTGAATGcttaatgaggatgaaaatgaagtATCATATGCTATAGCCTTCACACTCACCTAATCTCAACACAATTGTACACCTGTGGGAGATTTTCCTAGTGACGTGTTGGACAGCGCTCTTTACCACCATCTTCAAAACACCAGTTGAAgtaatatcttttggaagaatggtgttcttCCCCCTGCACACTTCCAAAGACTTGTAGAATCTCTGCCAAGGCACACCGAAACTGTTCTTGTGATTCATGATGGCCCAaaaccttactaagacactttatcttggtttttcctttaatttgtcaccagtCTTTATATTATCATCAACTTTCCAGTACAACTGCACCTTCAGACTCTGGAAGGCTGGACCCTAAGAGTTTAATCATACCAACCTGctccaaggaaaaaaaaaagtgatcctGGCTGTCTAGAATGAAAGTCGtactgtgtcccaaaccacgtCAACAAGTCTATGTGATATTACCTAAGAACTGCATGCGGTCTGATGGATGCTGCAAATATTTACTATGTGAAAAGATTTTGCGTAAGATGGATGTTCATTACGTCTTACCTACAATAGCCTCATTGCTCCTGTGCAAAtctaaaaaaagcaaatgttggACACTAATCACGTCTTGGTTGATcgactacatttggggtaagaagaaaaaaaactgcaaagttGATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210915 lncRNA upstream 218050 8588820 ~ 8589555 (+) True G178192
TU210887 lncRNA upstream 263130 8544269 ~ 8544475 (+) True G178170
XR_004579114.1 lncRNA upstream 285483 8514356 ~ 8522122 (+) False LOC113536702
TU211134 lncRNA downstream 174021 8982965 ~ 8984242 (+) True G178383
TU211135 lncRNA downstream 174607 8983551 ~ 8984242 (+) False G178383
TU211320 lncRNA downstream 396513 9205457 ~ 9205678 (+) True G178539
TU211525 lncRNA downstream 468661 9277605 ~ 9277816 (+) True G178740
TU211526 lncRNA downstream 468943 9277887 ~ 9278116 (+) True G178741
XM_034308960.1 mRNA upstream 24763 8727720 ~ 8782842 (+) True chsy1
XM_026930884.2 mRNA upstream 83523 8718527 ~ 8724082 (+) True selenos
XM_026930769.2 mRNA upstream 89776 8711155 ~ 8717829 (+) True snrpa1
XM_026930802.2 mRNA upstream 106040 8631823 ~ 8701565 (+) True pcsk6
XM_026930615.2 mRNA upstream 236437 8565280 ~ 8571168 (+) True spg21
XM_026930618.2 mRNA downstream 186432 8995376 ~ 9001851 (+) True lins1
XM_034308738.1 mRNA downstream 186432 8995376 ~ 9001851 (+) False lins1
XM_034308952.1 mRNA downstream 198425 9007369 ~ 9035454 (+) False cers3a
XM_026930620.2 mRNA downstream 198429 9007373 ~ 9035452 (+) True cers3a
XM_026930621.2 mRNA downstream 198431 9007375 ~ 9035452 (+) False cers3a
TU210703 other upstream 536856 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 536856 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 559517 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 562581 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 564111 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 2287209 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 2351402 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 2351442 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 2351442 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 2603116 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile