RNA id: XM_026930818.2


Basic Information

Item Value
RNA id XM_026930818.2
length 3373
RNA type mRNA
GC content 0.42
exon number 5
gene id asb7
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8983182 ~ 8995120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTCCTGATTGGCTACATGCACCCTATCCGAAGTGGACGGCTAACTGGCTAGCTGCATTTTGTTCCAAGTATGAAGCTTTGAATAGTTTTTATATTGGTTTCTTTTCAGCGGTTGCTGCCACAACGCACCAGATACAGTTTGTGACGCTTCTGCAGTTAGAAGTTTGATGCCGATTGGGCTGGATTGAAAAATGCGCCCAAAACACAAAGGGCCTTTCAGAACTGCTGTACATTAATCAAAGGGACGCAGGAGTGGCTGCGCAATGTGACAGGATGCTGAACCATCACTTCAGAAGGAACCCGGACCTGCAGGAGGAGCTGCAGATCCAGGCAGCGGTGGCAGCCGGCGATGTCTACACCGTGCGCAAGATGCTGGAGCAGGGCTACTCGCCCAAGATCAGGGACGCCAACGGATGGACACTGCTGCATTTCTCCGCCGCCAAGGGCAAGGAGCGCTGCGTCCGTGTCTTCCTCGAGCATGGAGcggACCCGACAGTAAAGGACTTCATTGGCGGTTTCACGGCGCTGCACTACGCCGCCATGCACGGACGCGCACGCATTGCTCGCCTTATGCTGGAATCAGAGCATCGTGGCGACATCATCAATGCCAAGAGCAACGACGGCTGGACGCCACTGCACGTGGCTGCACACTACGGCCGTGACTCCTTTGTGCGCCTGCTCTTGGAGTTCCATGCTGATGTAGACCCACTGAGCGACAAGGGCACTACACCACTGCAGCTGGCCATCATCCGAGAGCGCTCGAGCTGCGTGCGGCTGCTGCTTGACCACCATGCCAACATCGACGTGCAGAATGGCTTCCTGCTGCGCTACGCTGTCATCAAGGGCAACCACGCGTACTGCCGCATGTTCCTTCAGCGTGGCGCAGACACCAACCTCGGGCGCGTGGAGGACGGTCAGACACCGCTTCACCTCTCGGCTCTGCGTGACGACGTGCTCTGTGCACAGCTTCTCTACGCCTATGGAGCTGACACAAACACGCGCAATTACGAGGGCCAGACGCCCGCAGCTGTCTCAGCCAGCATGTCCCGCGCCAGCCGGCCCTGCCTCGACTTCCTGCAGGAGGTTACACgCCAACCCAGGACATTGCAGGACCTGTGTCGGATAAAGATTCGTCAGTGCATAGGCCTTCAAAGCTTAAAGTTCCTGGAGGACTTGCCTATTGCCAAGGTGATGAAGGACTACTTAAAACACAAGTTTGACAATGTCTGACAGAGGCTTGGAAATCTCCAGGCATCAGCACAGGAACAGATTCTCTAGCAAAGACTATGCAACCTCTCATTTTCCTTTCTGTTCTTAACGTCGGGCAGCGGATTGTTTTCTACAACCAAGCGTgatgtttttctgtcatttaatCTGGAAATATAGCCAAGCTACCTGTCATGGACACTGAACCCCAGCTTGTGTTCATCATTTGATTATTGACccaggaaaggaaaaagaattacaacatattttatttgaacaaTCCAGTCCTAGTATTAGGTTGGAATTAAGGGTGATATCAAAAGCTGATGTTATGATGAGCTTATATCAACCCAATATCGTGGCTTTTGGTATGTTAttacatataattaaattatttgaatATGGAAATtgatgcaagtttttttttattattcaagcTCATAGTTTGTAGTTCTcaaaacaatttcaaaataCTAATTTACCTATACATCTTTCATATTcacttattcatttttttgtgatcAGCAAAACATTTTATGCATCAATCGCAAAACATTAATGGTATAACTATCAGATTTTCTTATCATGATACACAGATACCAATAAATCATCACACTCCTAGTTTCAAGTATACCTGTACAATAGATAAACAAACAATCCCTTTTATACTAACttactgactttttttgtttaagatgTGTGGAATTTGACATTTCATACAAAATGAAGTCAATTGTGCACCTTCTTCCACTCGACTATTACCAATTCAGCACGTTTCGAAGGTGCACAGAGTTAGTTGTCAcgttaaatacaaaatatttgacTTGTGAAACAAGcattaaaactgtgatttgaacTTTTCTTCAGTTTTCCCACTTGAAGTTTTGGTTTCCTCATGCGGAACTCATTAACAAGGACTACACTATGTATATAATTGTGTCATATGTACAGCAGATATTTTTCTAGAATTATTTAAGCTATGAACTCTTGTATCATAAAGTGTTTAGGATTTTTGTTGAATGGTCAtgcggctttttttttttttttaagtcttaatattttttgtttgttacatttttagAATTGAAACACATTGACAAACTAATTGGGAGCAATTAGTGAAATTGTGGAAATATAGTTAAAATTTTTCCCTCTATCAGATTTATATCTAAGAGTTTTTTGGAAGTTGgcacatggcaaaaaaaaaaaaaaaaaaaaagttctacgCTCACTGTTCAAGGCCCACAGCATTTAGTCGTGCCTTCACTTGGGTGGATTCTTGGGTTCCTCAACAACATGCACATTTTCTCTGGTGTGTTACTTGTTATTAAATTAAGTTGACTAGTTTTTGTAAGAAACACCAGTATAATCTAGTAAcgtatttattttgttcatttcttacATCTTTAGTCCGATTAAAAAGTATGCATTGTCCCACCTGTATTGAGTAGGCACATGCCTATAATTGGttatacaatactgtgcaataTTAATATTGTTGACAGGTCAAACTATTGTAGTTCTTTTCACAAGGTTGTCCATTCATCTATTTGGAAGCCAGTCCCTAATAAATCTCCTTATTGATGACATATTTAAAGGAGCATTGAACATGGACGTTCTTTCAAATTCAAAGGGTGATACGATTGTAAATCAGGATGAAAGGTTAGGCAAAGGATGTGGAAATTTAAAGTGAAGTGTATATGGCTGgatgatgtgtttatttttattcagctaCACACTAATAAAATGGCGGTGTATTTGTTAAAATAGAGGTTATTGTATTCTTTCAATGTTGCAGGGCTGAACTGAAATTTCCTCACTTAAGCACAGGTGAGCTGGTCATCTGCATCTAAATCCAGGAATAAAGAAGAATTGGACTTTTTCTGTATCTTCAGGTTTTCATAGTTTCAGTAAAGTCCGACTCCACTTtaaaaaacagcagtgttttctCTGAAATTTTgtttacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttggtttTGAAGCGCTGATGTGTTTTCAGAAAGCACTTATTCCGGATTCAAATCGTCTCGACGTCTTCCACGCCGTTCACCACAACAACTACTGAATGTATATAAACTGCTGTTTGCCTAGCCCAAAATGAATTGTGTGAATAAATGATTATCACAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211159 lncRNA downstream 271064 8711177 ~ 8712118 (-) True G178398
TU210961 lncRNA downstream 389777 8593186 ~ 8593405 (-) True G178227
TU210939 lncRNA downstream 461097 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 659018 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 707822 8271107 ~ 8275360 (-) True LOC113536653
TU211271 lncRNA upstream 8531 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 191958 9187071 ~ 9189914 (-) True G178673
TU211464 lncRNA upstream 202487 9197600 ~ 9197805 (-) True G178679
TU211667 lncRNA upstream 315111 9310224 ~ 9311903 (-) True G178867
TU211668 lncRNA upstream 317741 9312854 ~ 9313650 (-) True G178868
XM_026930283.2 mRNA downstream 32373 8926812 ~ 8950809 (-) True aldh1a3
XM_026930411.2 mRNA downstream 58797 8807587 ~ 8924385 (-) True lrrk1
XM_026930526.2 mRNA downstream 370876 8596180 ~ 8612306 (-) True plekho2
XM_026930613.2 mRNA downstream 393830 8572475 ~ 8589352 (-) False ankdd1a
XM_026930614.2 mRNA downstream 393830 8572475 ~ 8589352 (-) True ankdd1a
XM_026930805.2 mRNA upstream 325853 9320966 ~ 9336186 (-) True mthfs
XM_026930299.2 mRNA upstream 392378 9387491 ~ 9407193 (-) False LOC113536412
XM_034308446.1 mRNA upstream 392378 9387491 ~ 9406551 (-) False LOC113536412
XM_034308447.1 mRNA upstream 392378 9387491 ~ 9393193 (-) True LOC113536412
XM_026930355.2 mRNA upstream 763539 9758652 ~ 9768100 (-) True mesd
trnae-uuc_3 other downstream 92484 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 735420 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 736407 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 738461 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 740379 8242731 ~ 8242803 (-) True trnar-acg_5
TU211757 other upstream 527303 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 818779 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2248862 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2413979 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 2500961 11496074 ~ 11503962 (-) False LOC117598430

Expression Profile