RNA id: TU211458


Basic Information

Item Value
RNA id TU211458
length 2823
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G178673
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9187071 ~ 9189914 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TataagattcatttatttttgtataactatTTAAACAGTTGTAATCAAATCAGCACCATCAAAAATGCAGATTATGTACCAATCATGTGCAACTAAAGACATACAGTACTGGAATATATACGCATATCTGCACCATAGCAGTAAATGAAGCAATTTTCACCAATAGGCTGAAGTCTCTGAAATAGTAAGGCAGCTACATTTTAGTATTAAATAATCATCACAAAACATATGTGTCAGAAAAGACCTATGGAAGAACAATCATGagaaaaacaggacaaaaaaaactgttgaatTCCACAGTAGTGAAATTTGTCTAGCACCAAATGAACCCTGCACTGCCTGAGAAAACAGGGGCCAAGGtatcttgaagaaaaaaaaacaaacaacaaaaacaacaacaaaaaaaaaacgacacacacacacacacacacacacacacctacctacACAGAGGGACTTTTATGTAGTGTAAAAACTTGGAAAGTTCACATTTTACACCTGTGATCCAAAGTAATGCAGCTGCATGTGAGCCTATAACCAGTTATAAAGACTTTACTGATGGTGTCATCAGGAGTTACTGAAAGATAAAACCTggtcattttgtttaataatgtgtCCAATGATTTTCATTGTAAATAACATAACTTTGTGTTGAACATGACTCCTGGAAATATGAAAATCTATGctagtatgtaaatgtatgctAGTCAAACATCCACTTTTCTTACATATGTAAACACATGTGCAATGTTCTTATTGAAATATATCAAACATTAACAGTACTTACTAAAACTGTGAAACAATGAAACACAAAAggaaaatatgttgaaattaaTGTTTTAGGGTGACAAACCCTTAAGTTGGAAAAATAAGTACGAATATagttaaataaatctgtgttaatCCTGTAGCCATGGAAAGAGTGGAATGGGGTGTTTGACCAAATTTActgacaatgaaaaaaatattgaaaaaaaaagatgggaaAGGAATTGGCCTAGTCATTAGAAGACTGATCTTAATCTTTCAATATTAACCTTTAACATTACCTGCTTTGTACTAATGAGAAAACTGGGTAAAGTAGAATTAATGTCAACAAAAGAACAGTTTCTACTGGTGTTATCTGGTgtaaatttagTCACCAAACcatgttttgcacatttaaGTGTTtcccctgctctaacacacctactTCAACTCTGGAAGGACTATTAATGAGCTCACCAGGTGTGTTAGTGCAAGAACAACAGTAAAATGCGCAGGAGAAAGgatactccaggaccagggttgggaacatGTGGTCTATATGAATTGTCCAATACTCACACATCCTATGTGTCAAAACCTAGCAATGTTTCAAAAAAACTTCGAGTCCTAACTCCCTCTAGAGTCTCTACTATGACTGGTCTTAGTTGAACACTTGTTTTGGTGTTCCAAATGGTGCATGTGCAATCCTGCAGTCCTAGTTTGGTTGCAGGATTTAGCAAATGAGCTTTAGGTAGCCTGTAGTGTATTTATGTGCAGaagtgccaacattgctaacaagaacaATCcagcaagaggaaaaaaaaaacagaattttaccacaaaaagaGTATATTGGTTGATGAGTGCGGCAAACCATGAGGCAAAGGTCTGGTGTGATTTGCTATGTAAGAAGCTCCTCCATTTTATTACTGACCACTTggtttctattggctcacaagacagAGGCTTGTGAAATCGCCAGTCAAacttcacctagataaagttggTGCAAAAAAAGTAAGTGACCACTACCATAAGCAAGAGCATGTCTTTTACCTTCAGTCTTTTCCATTTCAGTAAACTGTCTGctgaattttattcatatttggcCTGTCGAtttctttttctgaaaaagcagaaaagtgtagCTTTCAGGTGTTTCCCATATTGCCGTATCGAGGGCTCAAATCTGTTGCcacctctgtatgtgtgtagcaCTAGTAATTTTGCTTAGTATCTTTTCacattaatgtacacagataaGGCTAGAATTAGTTGCTCTTAATCCTCTTTAATAAGTGTAAAGTCCTCTCTCAAAATCAGTCTTAGCTATGACCTATTTAGCAGTTATAGATGATCTTACTTAAGACAACCATGGCTTGTGTCATAGCTCATGGGGTGCAACTGGCCCCATAAACCATGGCATTCTGGATCATATAATCTCGTTAAGGCACTTAATGGACTTCTCTAAGAAATCTGGAAGAAATAAGAGATAAGAAAATGAATATGTGATTAGGATATCAAAATGTCAATAATGTCCCGTTGCTCAGTTCTGGGATTACTGGCCAACCAGTGGCTTTTAGAAAGCAATGTAAGCCTTTCCTAAATGGTCAGCTTACTGTACAACAGCCAAGCTGCTATGTTCAAGAAGTCATCTCCAATGGCCTCCTATGTTCTCTTATGTTAAACTTTGGTTTACagcaaaacaattaaaaaagtcATAGACCTTTTGCACCATTTTAAAGTCAAAACCTTAAACGTTTTAACATCTCATCTGAAAGATCTGGCATGTGCATCAATTTCCCGGTTACTGCTTTAAAATCCAATAATCCTTAATAACAATATACACAGTGTCACTTATGACAGTACGAAAAGaggacataaaaataaaaaagctgctACGTGGCAAGAAGTGCCAGGCTCATTAACTTTCGTGGGACATTGTGCTGGCGTAAAAGTCTCTGCAGGTTTGGCAGCAGCGTTGGTACCAGCGCATGTCCTGGCACAGGTTCTTCTCCCGAATCACCCGACAGTACACCGTCCACTGATCTCCCGTGCACTTATACGTCAGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211271 lncRNA downstream 183219 9003644 ~ 9003852 (-) True G178501
TU211259 lncRNA downstream 202923 8983218 ~ 8984148 (-) False asb7
TU211159 lncRNA downstream 474953 8711177 ~ 8712118 (-) True G178398
TU210961 lncRNA downstream 593666 8593186 ~ 8593405 (-) True G178227
TU210939 lncRNA downstream 664986 8521801 ~ 8522085 (-) True G178208
TU211464 lncRNA upstream 7686 9197600 ~ 9197805 (-) True G178679
TU211667 lncRNA upstream 120310 9310224 ~ 9311903 (-) True G178867
TU211668 lncRNA upstream 122940 9312854 ~ 9313650 (-) True G178868
TU211661 lncRNA upstream 131150 9321064 ~ 9336136 (-) False mthfs
TU211709 lncRNA upstream 197593 9387507 ~ 9407218 (-) False LOC113536412
XM_026930820.2 mRNA downstream 191951 8989162 ~ 8995120 (-) False asb7
XM_026930818.2 mRNA downstream 191958 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA downstream 192124 8983182 ~ 8994947 (-) True asb7
XM_026930283.2 mRNA downstream 236262 8926812 ~ 8950809 (-) True aldh1a3
XM_026930411.2 mRNA downstream 262686 8807587 ~ 8924385 (-) True lrrk1
XM_026930805.2 mRNA upstream 131052 9320966 ~ 9336186 (-) True mthfs
XM_026930299.2 mRNA upstream 197577 9387491 ~ 9407193 (-) False LOC113536412
XM_034308446.1 mRNA upstream 197577 9387491 ~ 9406551 (-) False LOC113536412
XM_034308447.1 mRNA upstream 197577 9387491 ~ 9393193 (-) True LOC113536412
XM_026930355.2 mRNA upstream 568738 9758652 ~ 9768100 (-) True mesd
trnae-uuc_3 other downstream 296373 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 939309 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 940296 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 942350 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 944268 8242731 ~ 8242803 (-) True trnar-acg_5
TU211757 other upstream 332502 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 623978 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2054061 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2219178 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 2306160 11496074 ~ 11503962 (-) False LOC117598430

Expression Profile