RNA id: TU211548


Basic Information

Item Value
RNA id TU211548
length 1737
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G178763
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9320960 ~ 9332878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcatattttaaaagaaatgatacAACTATATTTGTACAGTGATACCATCAGCCAATGGGACATAGCGTTGCTACGCAATGAATATatggttaagaaaaaaaaggatcgACAGGGTATCAAAGAGACGCCAATAATTTGGAATAATTGCTAACTACCTGATAAAACATATGCCCGAATCCAGTTTACTCAACAAATGCAAAAGCAGCAATGCATCTAACCAGAGTATATAGTatacaaagaaaaagaacagcttTCATAAACATGTAAAGATGATTAGAGAACTCAAAATAAAGCAAAGTGATAATTACAGAGATCACCACAAGTGTTTCACTTTGTTTCGTCACTGCTTTCTATTATGATTGCTTGTTATTTTGCTTTAACTTATCTAGATTAAAAAGATAATCACAGTATGTTACATTAGCACAGCTTTTAAACTGTCTGATGTACTGAAAGGTTCTTATTCATCACACTTTTGTCCTGATCTCCTTTCTAATGAACAAAGTTAATGCACAGATTGAAACTCATGCTACAACAGCACTCTTACTTTGAATGCATAACATGGGTGtacttacagtatattttgGCTAAATATGAGGACATGACTAGTTATCTGTGTACCCCTGGACAAGAAATCAAATCTGTCAACCAGTCACAGTATTTATGATATGGCTACAGAATTTAAAGTAGTGTGTATCTGGGAAAAATGGCAAGGCACGGGGATTGAAGTGCCTCTATATTAACAACGTCTGTTAAAAGATGCacaaatcaatttaaaaagttAGCAAATGAGATTCTTTTTGCAATGTGTGTTTCTCTactcccctctctctgtctttctgcagTCTATCAGTTCCAGTGAAATAGACATGTGTTCCCACTCCTCAAAGCTAAATTAGACAATCTGCAATATTGAATCACACCATAATGCACTGAAACGGCACTAAATCATAACATACTGAGCTACTCTCAgctttaaatgtactttttatccacagGATTTTTGATTATATTGAGATTCAGACTGAGAGGTAGATTTTTACTCTTCATAACATATAAAATGTTGCATTCGTTAATTATTCCAACTTAACCAAAAGCAGTTTCATTGGATTTCATTTGACTGAAGTCATGGAAAAATCTGCAATTTCTTAACCTGCTTATCTTTAGCCCTTTGTAGCTTTCCTTGAATCATACTGAGTAAACTGTTTTGATTTTGGGATTGATATTTTTTTCGAGAGGTTCCAACTCAAACGTCCTCATAGAGAACTTCATCAATAAGTATGTCGCTGTCGTCCACAGGAACCTGTTCACACAGCTGCTCTTTAAAGGCCAGTGCGATGGTGTAGGGTTTGCCTTTAGGATGCCTCATACAGCGCTGAAGGTACAAGTCATAGAAGCCTTTACCTCGCCCCAAACGATTGCCATTTTTATCAAAGCCAAGACCAGGCATCAGGATCAGGTCTAAGCCACCTGTATGAAGTGAGAGCTTCCTGTCTCTGCGTGTCATTGTCAGCGGGCTGCCGGATGTTCCAGCTGGTGACGGGCAGCGAGTTCATGTCCTCCACGCTGTTCAGCTGTAGCATGTCCATGTGGTTGCTGTCGCTCTGATACCTGGGGATGAAACAGATCTTGCCGCTGCTGAATATGTGCTGAAGGATGGCTTCAGTGCGAACTTCATCGTGCATGCTCAGAAACACTGCGACACGACGGCTGCTTCTGTAGTTTGGATGTTGGAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211550 lncRNA upstream 10777 9309317 ~ 9310183 (+) True G178764
TU211545 lncRNA upstream 19622 9300994 ~ 9301338 (+) True G178760
TU211546 lncRNA upstream 21303 9299386 ~ 9299657 (+) True G178761
TU211526 lncRNA upstream 42844 9277887 ~ 9278116 (+) True G178741
TU211525 lncRNA upstream 43144 9277605 ~ 9277816 (+) True G178740
TU211578 lncRNA downstream 149457 9482335 ~ 9482920 (+) True G178789
TU211587 lncRNA downstream 301881 9634759 ~ 9640636 (+) True G178798
TU211608 lncRNA downstream 417567 9750445 ~ 9750713 (+) True G178817
TU211632 lncRNA downstream 449663 9782541 ~ 9782746 (+) True G178834
TU211639 lncRNA downstream 491568 9824446 ~ 9907446 (+) True G178839
XM_026930378.2 mRNA upstream 62963 9226447 ~ 9257997 (+) True minar1
XM_034308734.1 mRNA upstream 131041 9039210 ~ 9189919 (+) True adamts17
XM_034308735.1 mRNA upstream 131041 9039211 ~ 9189919 (+) False adamts17
XM_026930620.2 mRNA upstream 285508 9007373 ~ 9035452 (+) True cers3a
XM_034308656.1 mRNA downstream 3769 9336647 ~ 9349909 (+) False zfand6
XM_034308655.1 mRNA downstream 3882 9336760 ~ 9349909 (+) False zfand6
XM_026930698.2 mRNA downstream 4662 9337540 ~ 9349909 (+) True zfand6
XM_026930827.2 mRNA downstream 17318 9350196 ~ 9378551 (+) True fah
XM_026930828.2 mRNA downstream 17778 9350656 ~ 9378551 (+) False fah
TU210703 other upstream 1050211 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1050211 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1072872 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1075936 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1077466 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1763275 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1827468 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1827508 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1827508 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 2079182 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile