RNA id: TU211667


Basic Information

Item Value
RNA id TU211667
length 1680
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G178867
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9310224 ~ 9311903 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acaGAAAGTCAGTGAATTTTTATAGCCAGCATATAAAAGCTCCCCACTGCATCACATTCAACTTCCAACCTCTTTCCCATTCTCATCTTGCTGGGAGTTGGATTCAATGATCCTAAAATATACTGCTTGGTTTCTTGCTAATAACACTATTTTTGTTACTATTAAATCCGCACTGTCAAATGAGCATATCAGTGCCCAGAGGATGTTCATATAagtgtggaacaccaaactttacttcTGGATGAATAGAGAAGTTTCagttaacatttacaaactgataatgtcAGATAAGACCAGGAAAGAGCTGCTCCCATAACTTCCATGGGATTACTTCTACAGGACTGGTTCATGTTGGTGAACCTGCTTAACACCTCTTTTCATATCCCCATGACCCCAGATGCTTTTTAAGGTTGGCCTTCCAAGAATTGTCAAAAGAAATCTAGCCAACAGCATTTTAGATCAATTTGTAATGTTAGCCAGATGATAGTCTGCTATCTTGAATACCTCAAAATTGCCTAGAGTTAAGATGTATAACAGTAATGGTTGGGACTCGGAAGAGTGTTCTGGATCCAGGGGCATGAGGTTTATTAACGATTCCAAAAAACAGGCAATGATCTAAACACAAATCTTTATCCAACACAGCAAGGGCAAAGCAGTGATCCAAAGAATAATCCAAAACACAGGCAAAGGTCAAGCACTCAGAGTAATAACAATGCTCAGAAGGTAGTTggcaacactatacacacaagtGCTTACGGACcatgtgtttatatatgctAGAATAGGAAGCTAACAGGAAGTTGTGAGTGTGGAAGAATCCTTAATATTCAGGGGAGGGGGACCTCTGCTGGCATGGAGGTATAATCTCCTAGGTGCATGTTACAATAACCTACCaaatatgaaattattaaaaagccTGCAAATAGGGCTCTTGAGTgccacaacagaaaagcattcgcccTATCATCCAGAGATCACGAAGTTTTGATGATGcaacagccatctgtggctagGAGTCTAAGActgcaaaattggctgtgctgtcAGGGAGGGGATGGATGGTGTacactctctcccctatcaatcacagcaacactagccaatcatgcatctgtgagctcatgcatgctgaagggggcggatagcgctttcctctgtgtgtgctaaaaatgaaaacttattttgacattttttttctttgaaagaaAGGGAGAGTTTAGCCCTGATAGCCCATGTGCCTACCTAGTGAATTCAGTACTGGACTGTTGTCATTCTGGGAATCTTTACAAACcaacaacacacaaaaactGTCAGGAAACAAGTGAGTTACATACTTTTATAGCCTCTCACTCAAGagtttctgtgttgttttgacTGAAGTCCCATCAGTCTTTGTTGAAAGTCTGTTGCATGGGCTGTGAAGGGCAGGGGCGTGGAAAGATGATGACAGAGTTGTTTTAAAATGGTGGATggctgtgttgttttttgtgtgtttgtgtgtttatgtgtgtgtgcgtgtgcgtgcatgcatgtCCCCACAAAAAAGATAGCAATATCTGACAGTAACTTTCTTGGGACATTTTGATGGTCTGcaagtaaaactttttttttaaaggaagactgctaaaaaaaattaaaagaactAAAAGTTAAGGTTAGTGTTAGATTTAGGAGTAgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211464 lncRNA downstream 112419 9197600 ~ 9197805 (-) True G178679
TU211458 lncRNA downstream 120310 9187071 ~ 9189914 (-) True G178673
TU211271 lncRNA downstream 306372 9003644 ~ 9003852 (-) True G178501
TU211259 lncRNA downstream 326076 8983218 ~ 8984148 (-) False asb7
TU211159 lncRNA downstream 598106 8711177 ~ 8712118 (-) True G178398
TU211668 lncRNA upstream 951 9312854 ~ 9313650 (-) True G178868
TU211661 lncRNA upstream 9161 9321064 ~ 9336136 (-) False mthfs
TU211709 lncRNA upstream 75604 9387507 ~ 9407218 (-) False LOC113536412
TU211728 lncRNA upstream 129016 9440919 ~ 9443927 (-) True G178914
TU211776 lncRNA upstream 313381 9625284 ~ 9627183 (-) True G178961
XM_026930820.2 mRNA downstream 315104 8989162 ~ 8995120 (-) False asb7
XM_026930818.2 mRNA downstream 315111 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA downstream 315277 8983182 ~ 8994947 (-) True asb7
XM_026930283.2 mRNA downstream 359415 8926812 ~ 8950809 (-) True aldh1a3
XM_026930411.2 mRNA downstream 385839 8807587 ~ 8924385 (-) True lrrk1
XM_026930805.2 mRNA upstream 9063 9320966 ~ 9336186 (-) True mthfs
XM_026930299.2 mRNA upstream 75588 9387491 ~ 9407193 (-) False LOC113536412
XM_034308446.1 mRNA upstream 75588 9387491 ~ 9406551 (-) False LOC113536412
XM_034308447.1 mRNA upstream 75588 9387491 ~ 9393193 (-) True LOC113536412
XM_026930355.2 mRNA upstream 446749 9758652 ~ 9768100 (-) True mesd
trnae-uuc_3 other downstream 419526 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1062462 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1063449 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 1065503 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 1067421 8242731 ~ 8242803 (-) True trnar-acg_5
TU211757 other upstream 210513 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 501989 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 1932072 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2097189 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 2184171 11496074 ~ 11503962 (-) False LOC117598430

Expression Profile