RNA id: TU211728


Basic Information

Item Value
RNA id TU211728
length 2988
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G178914
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9440919 ~ 9443927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGCCATGCTGCACACCTGCTCAGTGAGGAAGGAGGGTTTATAGGCTCCATCAGTGGACGTGTTGCCAGTTCCTCTCATAGACTTCATGTGTGACACGGCCATACGCAGGATGGTGAGCTTGTCGGGTTTCCTGGCCAGCGCACTGCAAGTGGGCACCATGTCCGACAGCTCAGTGATGTACTGCGTCATTTTATTACGCCGGCGTCGCTCAATCTCGCTGTGGTTCTCTCTgcacagagaaacaggaaaaagcTAGTGCTTTATGTGCATGTAATGAAAGATTAATTAAGAACTATAAACAGTGAACAAGTTCTGGGAAAACTCTGATTGTCCTGAGTGTGTTAAATAAGGGGTGAACTCacaatttattacatatttattttatacaaactgGAGTACAAGAAAATCTATAACTGACTGGCAAACTGTTCTCATGTCGATTAGACTTAGCCCCTTGACTTAATGTTGTTTGTATTTAACATCAGTCTACTGTAATGGCCCTGTCTAAAAACGTTGTGTGTTGAATGCTGGTCTACTCCTAAACAAGCTAAAAGGACTTGATAGTATTTTACTGGGGCTGTCACTGTCATAGTCCTTAGCATGGGTCAAAGGCCAGCAAagatcaaaaccaggaagtactattagacacagaacacagaaagcTCAGGAACACAAAAAGCAAGACTttgcaacaaaacaaacaaaacagcaggGTATACGCAGACAACCTAATCAAGGGGTAACACATAACAGGTGAccacaatcaggtaacaaagcaatgacaggacaggggacAGTGACAGGACCAtgacagaaaccaaaacaaaaaccaatATGTTGCTTGCTGCCATGGGAACTgacatacattttatatcatttttgcaTTAGCTGATTTGTAATATGTACAGCAGTTACAGTAAACACTAGCATTACCTTGagcttaacattaaaaaaaaaaacgcatagCACTCTGGAAGAAAACACATCTGCAGTTACCAAAAATGTACTGTCAACTGACCGAACTTTACAGCTCAGTGGTTATGGCTCATGAGTTCAAGCCCTGGCACTGACAATCTGCCACTGccaggcccttgagcaaggcctgtAACACTCCCTTCTCCAGGGGCatcgtatcatggctgacccggatttcttcttcctttcttcttcaATACAGCACGGAACAATCAAACTTACAGGccaaaactaaactaaataccAATAAGGGCTTTAGAGGCAATGCaaccataaataaaataaattcttccTATATTAATGTGACTTGACTTGTGGAGCATGTATAAAGAGTAAGGGTTTGTTTTCTGTAGAATTTATGAAGAGACACTTATAGATTGAGTTAGCTTGATGTAACAGAGCAAGCAAACAGACTTCTGGGATTTTTTATGTCATTCATGTGTTTTGATACCTGTGTTATTCTGGCTGTTGGAGTTTTAGCTACCTCACAACTTGTATGAGCGATACGAGATATGACTAAGACCTGCTTTTCCGACCATACCATCAACTTGCACTGTGTTTGACGGGTATATAGTCTACACTAGTAGCTAATAACGACAATGTTTAAAGCTTTAGAAAACAGACTAAAAGCTATTTTGATGGTTAACAGTAGCTAACTAGCATTACCACATATTAGCAGGCAGACAAATTGAGTCTAAACttaagctaactagctaaacatAAAGAAGTTTAATAttaactgttaactgttaaTAACTAACCATTTAAATTTATTGTACATGTGACAAAGCTTTGCGCATGATCACCGCCACAGGAAGAAAGTAAAGTTAGCCGTTTCAAAGCAGTTTTTGGTTatgactgtatactgtaatgatttatagtctcactatctggtgtcacccagaggatgggttccctttagagtcttgttcttctcaaggtttcttcctcatgtcatctgaGAGAGTTTTTCACCTttgacttgctcattagagatctaaatctacatctggatttctgtaaagctgtgttGTGACAATATatactgttaaaagcgctatatgaataaaaatgagaataGTACCTGTTACTTAGACCGTAGAAGTGAGTGCTGACCCACTGTTTACAATCACTCTGAGATCGTCTTAGATCTTGGCACTAGTTGGCAATTTTTTTGAGAATTTGAAGGCAAAAAATTATCTCGTTAAGTTGGACAATCAATCACCATGTATCTACCCTTATAACACTCATTATCCCTCTTCACTGTTCAGCTCAGATATTCATTAAAGAGTACatagtctttttttaatccctcAAAGTTGAATCATAAAGTGAAGTCCAATAGAGCAAGCAGTATTATAAATCTGTTGTATTAGTCATCTGAGTCTGATAGCGCGACGAGACAGTGGCTTCAGGATGCCTTGCAGTTCACTTTAGGCAAGAAAAATGCACTGCAGAATTGCAATGAATCCAAGAACTAGGGGTTTAAAACAACGCCGATAAGTGTATTCATATCTATTTTTGCTCCAAATAACCATATCTGTATTAGGATTTAAAATTGAAAGTGGGTTTGGCCTAAAATGgaaagtgttttaaaattttctttctttctttccttccttcttcctttcctccttcttcttcttcttcttctttatccTGTAAACCCTTtatatgaaccctaccactataaCCCCAGAAacactaggaaaaaaaacacaagaggtAGAAATGCTAGCACtttcagcatggtgtgtgaattctggttcCAAGAAttcagttcctcaacctcagctacagcACTCGAGTTCATGTTAATAAATGCACtcttaaatatgtttattaatttaaagtttCTCAGATGACTCGCTCATTTTCATGACTTCCTGCCTGGAAGGAGGAGATGGTTGGGCTCAACAGAAGAGCCTCTGTCTCAGTGACAGAATTCTAGCAATGCCACGTCGCCCTACCTGGCATACCGTTCCTTATCAGCGGGCATTTGATCATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211709 lncRNA downstream 33701 9387507 ~ 9407218 (-) False LOC113536412
TU211661 lncRNA downstream 104783 9321064 ~ 9336136 (-) False mthfs
TU211668 lncRNA downstream 127269 9312854 ~ 9313650 (-) True G178868
TU211667 lncRNA downstream 129016 9310224 ~ 9311903 (-) True G178867
TU211464 lncRNA downstream 243114 9197600 ~ 9197805 (-) True G178679
TU211776 lncRNA upstream 181357 9625284 ~ 9627183 (-) True G178961
TU211823 lncRNA upstream 295604 9739531 ~ 9754379 (-) True G179004
TU211840 lncRNA upstream 326891 9770818 ~ 9774409 (-) True G179021
TU212223 lncRNA upstream 668101 10112028 ~ 10112242 (-) True G179372
TU212321 lncRNA upstream 1042938 10486865 ~ 10487943 (-) False sh3gl3a
XM_026930299.2 mRNA downstream 33726 9387491 ~ 9407193 (-) False LOC113536412
XM_034308446.1 mRNA downstream 34368 9387491 ~ 9406551 (-) False LOC113536412
XM_034308447.1 mRNA downstream 47726 9387491 ~ 9393193 (-) True LOC113536412
XM_026930805.2 mRNA downstream 104733 9320966 ~ 9336186 (-) True mthfs
XM_026930820.2 mRNA downstream 445799 8989162 ~ 8995120 (-) False asb7
XM_026930355.2 mRNA upstream 314725 9758652 ~ 9768100 (-) True mesd
XM_026930358.2 mRNA upstream 384021 9827948 ~ 9835960 (-) True stard5
XM_026930381.2 mRNA upstream 394072 9837999 ~ 9864785 (-) False LOC113536465
XM_026930380.2 mRNA upstream 394072 9837999 ~ 9864785 (-) False LOC113536465
XM_026930379.2 mRNA upstream 394072 9837999 ~ 9864785 (-) True LOC113536465
trnae-uuc_3 other downstream 550221 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1193157 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1194144 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 1196198 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 1198116 8242731 ~ 8242803 (-) True trnar-acg_5
TU211757 other upstream 78489 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 369965 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 1800048 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 1965165 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 2052147 11496074 ~ 11503962 (-) False LOC117598430

Expression Profile