RNA id: TU211776


Basic Information

Item Value
RNA id TU211776
length 1807
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G178961
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9625284 ~ 9627183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGAGTCTCTTGCCAGGTTGAATTAAATGTCATAGGTTTTAATGCCAACAGTGTTAAATTGACTCATACAgtattacatttacatctagAGTTGAATTAATATCAGTAGTATTGACTAATACCTGCAGTGTTGGATTAACACATATAATGCTGACTTAATGACTACAGTTCAAGATTAACATATACAATGATGATTTAGTGACTACAGTGTTTGTTTAACAACTAAAATGCTGACTTAATaactacagtgttgaattaacaccatctgtgttgaattaacacatacATTGCTGACTTAATaactacagtgttgaattaacatcattagtgttgaattaacacatacAATGCTGACTTAATaactacagtgttgaattaacaccatCAGTGTTGACTTAGCACCTGTAATGCTGTCTTAATaactacagtgttgaattaacacatacGATGCTGATTTAATAACTAGTGTTGACCTAACACCTGTAATGCAGGCTTAATAATTGTAGTgttgaatcaacaccttcagtgTTAAAGTCTACTTAATGTCTACAATGCTGAGCATTTCTAAGGTAGAATTTACACTTAGTTTTCAATGAACACCTATACGCAGGGTGTCcagtgtgtgcaggttttcGCTGCAACCAAGCAcccacatcggccctttccggataagactggacacccctgaCCTATAGTGTTAAGCTGACTCATACAGTGTTGAAGTAACATCTACACAGATCTGAAATTGGAGATGTTTAGTACTGTAGGAGTTATTTCAACAacgtaggtgttaattcagacTTTATGCTTAGGTCTCATGCCAAGACTGCATTATTTCATTCACTATAAGGTGTCAACTAGGTATTCAATCCAACACTGAAGGTTTTGCAGTGCAAATAAGTTGCTTCTCACTGATACTCCTCCACAGCAATTTATTCAGGTATTTATTCAATTAACACTTGtcattaaatgtttaatcataACGAATTCTCATAAGAATACAAATAAACGTGCACTCACCTCTGTGTGTGATGATGCAACGATGCTGTAACAGGTGCTCTTCTCAGGGTCGCTCAGCTCAGCATCACACCAAGGACTCAGGTTCCCAAGTGCGCTTACTTAACAAACTCATTATTAGTGCAGCGTGGAATGCGACCACGTGCATACAGCTCAAAATCagctgttcatctctctctctctctctatttctctctctatgCCAGTCTAGGCAAAGTGCACTGGATTTCCCAGTCCTGCTTCTTTAGTCCCTCTGCCCAGTACATCTTGTGcattaacacacctgactcTACTCAGCTCTTTAACCAGCCTCACGTGAATTTTTAATAGGGAGATTCAGTGCGAGCGTAATTAAATAATAAGGATTTGGGgattggatttttaaaaagtaggtCGCCACAATACAACTGTGCAATGAGTGACTCCAGCGCACTACATTTAAGATGATTTGTTTTGGGTTTATACCTGTGAAATATTGTGCATGCTAAAATGCAAACTCGAGTTCCAATTAAAACCAGGCAATCCCTTAATTGCACGAGCCTAAATATGGAAAGGTGCACACTGAATGACACATACCAACCCGAGTTTCCCTCCTCTAAGGAAAGGAGCTCGCGCTCTCCTCTTACGCACCTGTGTCTTATTGAAATATCGACTCTCAACCCTTTAAACGGATCTACACAGATAAATCAAgcttgtgcagaaaaaaaagtccATAAAGATAAAAAGTCCAAAGTGACACACAAACCTGGATGCACGAACAAAAATCGTTGTCCGCTTCTCGGCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211728 lncRNA downstream 181357 9440919 ~ 9443927 (-) True G178914
TU211709 lncRNA downstream 218066 9387507 ~ 9407218 (-) False LOC113536412
TU211661 lncRNA downstream 289148 9321064 ~ 9336136 (-) False mthfs
TU211668 lncRNA downstream 311634 9312854 ~ 9313650 (-) True G178868
TU211667 lncRNA downstream 313381 9310224 ~ 9311903 (-) True G178867
TU211823 lncRNA upstream 112348 9739531 ~ 9754379 (-) True G179004
TU211840 lncRNA upstream 143635 9770818 ~ 9774409 (-) True G179021
TU212223 lncRNA upstream 484845 10112028 ~ 10112242 (-) True G179372
TU212321 lncRNA upstream 859682 10486865 ~ 10487943 (-) False sh3gl3a
TU212324 lncRNA upstream 884438 10511621 ~ 10512024 (-) True G179466
XM_026930299.2 mRNA downstream 218091 9387491 ~ 9407193 (-) False LOC113536412
XM_034308446.1 mRNA downstream 218733 9387491 ~ 9406551 (-) False LOC113536412
XM_034308447.1 mRNA downstream 232091 9387491 ~ 9393193 (-) True LOC113536412
XM_026930805.2 mRNA downstream 289098 9320966 ~ 9336186 (-) True mthfs
XM_026930820.2 mRNA downstream 630164 8989162 ~ 8995120 (-) False asb7
XM_026930355.2 mRNA upstream 131469 9758652 ~ 9768100 (-) True mesd
XM_026930358.2 mRNA upstream 200765 9827948 ~ 9835960 (-) True stard5
XM_026930381.2 mRNA upstream 210816 9837999 ~ 9864785 (-) False LOC113536465
XM_026930380.2 mRNA upstream 210816 9837999 ~ 9864785 (-) False LOC113536465
XM_026930379.2 mRNA upstream 210816 9837999 ~ 9864785 (-) True LOC113536465
TU211757 other downstream 101954 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 734586 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1377522 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1378509 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 1380563 8244649 ~ 8244721 (-) True trnar-ucg_7
TU211855 other upstream 186709 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 1616792 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 1781909 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 1868891 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 3090178 12717361 ~ 12720476 (-) True G180485

Expression Profile