RNA id: TU211918


Basic Information

Item Value
RNA id TU211918
length 200
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G179085
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10073818 ~ 10074017 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACATCATGCTCCGTTTACTTACACTGCCTTTTGTTCATCTGTTAGACTGATCAGTGTTGTTGTGACTGATCACTTGTCTGTTCAGCTTGTAAAAGTAGGTTATAGAGACTACAAAGTCACAATACAGGCAACTGAATTTAGGTATAGTGTTGTAACTGGCCTGTAAACACACCACTTAGTCCAGCAGATTGGTCatgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211639 lncRNA upstream 166372 9824446 ~ 9907446 (+) True G178839
TU211632 lncRNA upstream 291072 9782541 ~ 9782746 (+) True G178834
TU211608 lncRNA upstream 323105 9750445 ~ 9750713 (+) True G178817
TU211587 lncRNA upstream 433182 9634759 ~ 9640636 (+) True G178798
TU211578 lncRNA upstream 590898 9482335 ~ 9482920 (+) True G178789
TU212048 lncRNA downstream 182749 10256766 ~ 10260608 (+) True G179212
TU212279 lncRNA downstream 412680 10486697 ~ 10491773 (+) True G179425
TU212280 lncRNA downstream 418016 10492033 ~ 10492469 (+) True G179426
TU212281 lncRNA downstream 422631 10496648 ~ 10497140 (+) True G179427
TU212282 lncRNA downstream 423471 10497488 ~ 10497712 (+) True G179428
XM_034308705.1 mRNA upstream 251589 9792081 ~ 9822229 (+) False il16
XM_026930728.2 mRNA downstream 177708 10251725 ~ 10257578 (+) True saxo2
XM_034308925.1 mRNA downstream 386104 10460121 ~ 10479323 (+) True lmnl3
XM_034308924.1 mRNA downstream 386104 10460121 ~ 10479323 (+) False lmnl3
XM_026930793.2 mRNA downstream 408154 10482171 ~ 10483611 (+) True cx36.7
XM_034308892.1 mRNA downstream 481268 10555285 ~ 10563493 (+) True LOC113536420
TU210703 other upstream 1803069 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1803069 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1825730 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1828794 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1830324 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1022136 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1086329 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1086369 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1086369 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 1338043 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile