RNA id: XM_034308760.1


Basic Information

Item Value
RNA id XM_034308760.1
length 1244
RNA type mRNA
GC content 0.49
exon number 9
gene id sh3gl3a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10486735 ~ 10523579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGTGCACACTACAGCACTCAGTAGTCAGCACTCCACTACAGCACTCAGTACTCAGCACCGACTACAACCCTGAGGCTCCGACTAGGATTTTCTCCCGATAGCTGAAGGATTATTTTGTGTCTTTTCCTCATCATTTTGACTTTATTCTACCTCTGTTTCGACTTTTGCCCCATTTTCTCTGAGGATGTCGGTGGCGGGTTTGAAGAAGCAGTTTCATAAAGCCAGTCAGttacTGAGTGAGAAGATAAGTGGTGCTGAAGGGACAAAGCTCGATGAGGATTTCATGGAGATGGAGCGGAAAATAGATGTCACCAACAAGTCTGTGTTTGAGCTCCTAACCAAAACCACAGAATACCTCCAGCCAAACCCAGCATCACGAGCCAAACTGGGGATGCTGAACACCATGTCAAAGATCAGAGGACAGGTAAAGACCACTGGTTACCCACAGACAGAGGGGCTTCTGGGAGATTGCATGCTCCGGTACGGCCGTGAACTTGGAGACGACTCTACGTTtgGTTGTGCTCTGTTGGATGTGGGCGAGGCTATGAAACAAATGGCCGATGTTAAAGACTCGCTCGATATCAACGTGAAGCAGAACTTCATCGATCCGCTGCAGACACTGCAGGACAAAGACCTGAAGGAGATTGGGCATCATCTAAAGAAGCTGGAGGGACGGCGGTTAGATTACGACTATAAGAAGAAGCGTCAAGGCAAGATTGCTGATGATGAAATCAAGCAGGCTGTGGAGAAGTTTGTGGAGTCCAAGGAACTTGCCGAGAGGAGCATGTTCAACTTTTTAGAAAATGACGTGGAGCAGGTGAGTCAGCTAGCAGCTCTGATCGAGGCAGCACTGGAGTATCACCGTCAATCCAGCGACATCCTGGAGGAACTCAATGGCAAATTACAGAGCAGGATAAACACAGCAAGCTGTAAACCTAAGAAAGAGTTCAAGCCAAAGTCCATCATGTCCAGCCTGGAGGCCATCAACAGCAATCAGCATAATGGTGTCTCCTACACTTCCTCTCTAAAATCCACAGAGACGGAGCTGCACATGGACCAGCCGTGCTGCCGCTCGCTGTACGACTTCGAACCTGAAAACGAAGGGGAGCTCGGCTTTAAGGAAGGAGACATCATCATCCTTACCAATCAGATCGACGAGAACTGGTACGAAGGGATGATCAACGGCGAGTCAGGCTTCTTTCCCATCAACTACGTCGAGGTCCTAGTTCCCCTACCGCAATGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212321 lncRNA downstream 3555 10486865 ~ 10487943 (-) False sh3gl3a
TU212223 lncRNA downstream 379256 10112028 ~ 10112242 (-) True G179372
TU211840 lncRNA downstream 717089 9770818 ~ 9774409 (-) True G179021
TU211823 lncRNA downstream 737119 9739531 ~ 9754379 (-) True G179004
TU211776 lncRNA downstream 864315 9625284 ~ 9627183 (-) True G178961
TU212342 lncRNA upstream 37824 10561403 ~ 10563452 (-) True G179478
TU212349 lncRNA upstream 50957 10574536 ~ 10576032 (-) True G179485
TU212351 lncRNA upstream 54841 10578420 ~ 10579460 (-) True G179487
TU212392 lncRNA upstream 81932 10605511 ~ 10695119 (-) False LOC113536673
TU212640 lncRNA upstream 670858 11194437 ~ 11195673 (-) True G179727
XM_026930622.2 mRNA downstream 38727 10258307 ~ 10452771 (-) True adamtsl3
XM_026930624.2 mRNA downstream 38735 10310764 ~ 10452763 (-) False adamtsl3
XM_026930623.2 mRNA downstream 160733 10258307 ~ 10330765 (-) False adamtsl3
XM_026930679.2 mRNA downstream 240158 10114613 ~ 10251340 (-) False efl1
XM_026930678.2 mRNA downstream 240281 10114613 ~ 10251217 (-) False efl1
XM_026930826.2 mRNA upstream 3454 10527033 ~ 10530371 (-) True LOC113536710
XM_034308456.1 mRNA upstream 21188 10544767 ~ 10555198 (-) False rnf13
XM_034308453.1 mRNA upstream 21188 10544767 ~ 10555198 (-) False rnf13
XM_034308454.1 mRNA upstream 21188 10544767 ~ 10555198 (-) False rnf13
XM_034308455.1 mRNA upstream 21188 10544767 ~ 10555198 (-) True rnf13
TU211855 other downstream 676273 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 968168 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 1600800 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 2243736 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 2244723 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 720396 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 885513 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 972495 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2193782 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 2712824 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile