RNA id: TU212525


Basic Information

Item Value
RNA id TU212525
length 229
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G179628
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11069589 ~ 11069817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatggtgtgtgtcagtgtttgataGTGTCCGTATTTAATGGCatcagtgtttgatggtgtgtgtcagtgtttgataGTGTCCGTATTTAATAGAATCAGtatttgatggtgtgtgtcagtgtttgatagtgtcagtgtttaatggtgtcagtatttgatggtgtgtgtcagtgtttgataGTGTCCATATTTAATGGCatcagtgtttgatggtgtgtgtcagtgtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212457 lncRNA upstream 205739 10863649 ~ 10863850 (+) True G179572
TU212441 lncRNA upstream 218724 10830324 ~ 10850865 (+) False LOC113536516
TU212446 lncRNA upstream 260318 10809036 ~ 10809271 (+) True G179561
TU212443 lncRNA upstream 264278 10805105 ~ 10805311 (+) True G179558
XR_003403698.2 lncRNA upstream 285475 10783125 ~ 10784114 (+) True LOC113536738
TU212552 lncRNA downstream 82201 11152018 ~ 11152956 (+) True G179647
TU212553 lncRNA downstream 82332 11152149 ~ 11154763 (+) True G179648
TU212593 lncRNA downstream 93204 11163021 ~ 11163379 (+) True G179685
TU212604 lncRNA downstream 125019 11194836 ~ 11195687 (+) True G179696
TU212674 lncRNA downstream 331107 11400924 ~ 11401434 (+) True G179754
XM_026930494.2 mRNA upstream 218666 10810670 ~ 10850923 (+) True LOC113536516
XM_026930495.2 mRNA upstream 218666 10810670 ~ 10850923 (+) False LOC113536516
XM_026930894.2 mRNA upstream 395537 10650258 ~ 10674052 (+) True LOC113536756
XM_026930758.2 mRNA upstream 446425 10617812 ~ 10623164 (+) True tctex1d2
XM_034308893.1 mRNA upstream 490196 10565259 ~ 10579393 (+) True rubcn
XM_034308868.1 mRNA downstream 43827 11113644 ~ 11160226 (+) False LOC113536667
XM_026930764.2 mRNA downstream 43828 11113645 ~ 11160226 (+) True LOC113536667
XM_026930765.2 mRNA downstream 43828 11113645 ~ 11160226 (+) False LOC113536667
XM_026930852.2 mRNA downstream 106280 11176097 ~ 11181854 (+) True b3gnt7
XM_034308527.1 mRNA downstream 291147 11360964 ~ 11379995 (+) True alpi.1
TU210703 other upstream 2798840 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 2798840 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 2821501 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 2824565 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 2826095 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 26336 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 90529 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 90569 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 90569 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 342243 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile