RNA id: TU212726


Basic Information

Item Value
RNA id TU212726
length 318
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G179787
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11521803 ~ 11524359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTCTTGGGGAGTAGATGGTGATGCTGTAACTGTTTGTGCTGCTGACGTTTGTGGAGATTTAGATGTTGATGACTGATCCGAGAAGGATTCTGGTGAAGTATAGGGTGATGGTGTAACCCATGGTGTTGATAAAGTTTCTGGAGTTACAGATGCCGATAAAACTTCAGATGCTGATGTCTGGTCTGTAGATAATTCTGGGGAGATAAACAGTGATTCTGTAATGGATAGTGTTGATAAAGTTCCTGGAGATTCAGTTGTTGATGAGTGATCTGTAGATAATTCTGAGAAAGTAGATGGTGACGCTGTAACTGTTTGT

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212723 lncRNA upstream 2864 11516747 ~ 11518939 (+) True G179786
TU212710 lncRNA upstream 46656 11473568 ~ 11475147 (+) True G179775
TU212705 lncRNA upstream 48596 11471346 ~ 11473207 (+) True G179773
TU212682 lncRNA upstream 90906 11428613 ~ 11430897 (+) True G179758
TU212671 lncRNA upstream 114389 11404359 ~ 11407414 (+) True G179753
TU212786 lncRNA downstream 42999 11567358 ~ 11567567 (+) True G179834
TU212810 lncRNA downstream 175323 11699682 ~ 11699975 (+) True G179858
XR_004579093.1 lncRNA downstream 302570 11826929 ~ 11828538 (+) True LOC117598421
XR_004579069.1 lncRNA downstream 507641 12032000 ~ 12037456 (+) True LOC117598401
XR_003403684.2 lncRNA downstream 521445 12045804 ~ 12053150 (+) True LOC113536506
XM_026930520.2 mRNA upstream 64395 11446953 ~ 11457408 (+) True htr2b
XM_026930521.2 mRNA upstream 64395 11446953 ~ 11457408 (+) False htr2b
XM_034308807.1 mRNA upstream 101986 11409068 ~ 11419817 (+) True ncl
XM_026930646.2 mRNA upstream 118839 11395207 ~ 11402964 (+) False ppp1r2
XM_026930554.2 mRNA downstream 27167 11551526 ~ 11562360 (+) True ttc14
XM_026930536.2 mRNA downstream 331260 11855619 ~ 11861835 (+) True dnajc19
XM_034308815.1 mRNA downstream 376037 11900396 ~ 11958703 (+) True atp11b
XM_034308818.1 mRNA downstream 376037 11900396 ~ 11958703 (+) False atp11b
XM_034308816.1 mRNA downstream 376037 11900396 ~ 11947598 (+) False atp11b
TU212683 other upstream 92464 11428613 ~ 11429339 (+) False G179758
XR_003403710.1 other upstream 103560 11418114 ~ 11418243 (+) True LOC113536800
XR_004579127.1 other upstream 109163 11412574 ~ 11412640 (+) True LOC117598448
XR_003403700.1 other upstream 109676 11412060 ~ 11412127 (+) True LOC113536790
TU212547 other upstream 360586 11160386 ~ 11161217 (+) False G179643
TU213106 other downstream 530599 12054958 ~ 12055749 (+) True G180121
TU213163 other downstream 803707 12328066 ~ 12333631 (+) False timm13
trnag-ucc_15 other downstream 863811 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213294 other downstream 1048834 12573193 ~ 12602064 (+) False LOC117598398
TU213850 other downstream 1572014 13096373 ~ 13098156 (+) False ankmy1

Expression Profile