RNA id: TU212748


Basic Information

Item Value
RNA id TU212748
length 3883
lncRNA type inter_gene
GC content 0.43
exon number 16
gene id G179803
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11409092 ~ 11420046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAATAACAGGATGCACAACTTTTACAAatcatttagtttatttaaaatttatcatTTTCAACATACGCAAGTAAAAAGTTTGTTGATGTAGTTAGATATAATCCAGACACTGATCTCTACAAACCATTGAGGCATTTTTGAACAAAGCaacttctgtctctctctccgtctctctctctcacacacacacacacacacgcaggcacAGATTTACGACAGTACACAACTTAACCAGATTTCAAAAAGCCCAAACACATTTTTGGGCATGTTTAATCGTTCATCTTTTATAATATGCTTTGTACAGTTTATGGTAAAACACGCACCTaaagcaaactaaaaaaaacagacaataaatCATTTAGGgatattttaacaaaaacagtaaaaataaaaaaaaaaaaaaaaaaaaaaaaaacaacattcattcacacttcaATTTTTCTCCCGCAAAATTGGGGAAAACATGAAGATGCGCACAGATGAAGAGGAACATTTGAGAATGCAGGAAgctttcagacagaaaaaagatGGACGCTCCATTAATTATTGAGATGCTGGAATGTCCCAAAGACCATTCGAGCAGAAACACAGTCCGTTTATttggaaatattaaaaaatagagAGTAGTTTTTAATCGTCAAATCTGATCTTCTTTCCTTGAGGTTTTGCTCCGGCTCCGCCACCTCGGCcacctgaaaaataaaatcacattaacttgagataattataaataaactgaaatatttattacaatggATCTAACAGAGACAAATCGTTATGAAAGACTTTACatattcatttcactgtgtgtaaagTGATGCATTTATTACCTCTGAATCCTCCCCTTCCTCCTCCACGGTGtccacctcctcctctccctccaaatcctcctcgtcctcctcctctgccGCCTCCGAaccctcctcgtcctcctcctcttcctccttctccttttgGCTTGGCATAGTCCAGAGTCACTTTGTTTCCATCAATCTCTGCATCGTCCATCGCTTCCTTCGCTGCTTTGCAGTCTTCCTCGCTGTCGAAGTCGACAAAACCGtacctgcaaaacacacaaccTTGGTTACGTCTCACCATCACTACACGTCAACTGCACTGTgctgttaccatcccaaagttaattattctcttgtaacagcacatccctaagagttttatttcttttataccacactTTCACAATGATTACAACAGTGCCATGTCatactttatccatttatagttagatttaatgttgtggaatgtcagtaAAACAATTTAggtcctgttctcacttactgcagctaaacagtcatttctcaccagcctctcttttttgtctctcttgaagttaatgagagaaaaaaaggagcttGTCTTGCTATCAGGAAATCAGAAAGTGTAAACTactgtcctgaaaatgttggaaaaacttaaatttacagctttacctctggctgttacaaagcactgacaccagaaatgttaaatatctccttacagaaaacttcaccatatcaaaaatgatttttttttatttattcatgcgGCATGTTCACCAtgcgagtccctgtgaatgagctgttactatataaatgataaatagaatgagtgcattaattataaacctgtgatttgcaagTCTGACcgatcagaatccagaatttacCAGCTCTATAGTATAAACTGAAGGGCAGTTTATGATGCCAGAGGTTCAGTTgtgttgaaacacacacaggttataAACAGTAAAGGTTGTTATACAGCTAGTTGTCTCACATCAGACATAAGCAACTCCCATCATAGAGGAGAGACTCGTATAAATGTGAGTGTCAATCTACTTCTCGTGCGAATCCATGCTCTGTCACCATCACACAGAGAGGAGCTCATGAGAAGATCATTTAACAGTTGAACTTGTGAAAGTTTGCAGGCTGCATCGTTTCAAAATAATATTGAACCCTGGCGTTGGAACTACAACTTGTTCCATttcaaactgaatttttttttttgtaaacgtGGAATAAAAACACCCCACACACCCTGGGGGTGCCATGCTCAACCATTCACTATCCTTCCTGCCCTGAGGCttgctctgattggttgagacAAATAATACTAAGAACTAAAGAACTATCTAGGAGGGCTGGGTGATGTATAATCCAGCGCCTCCTTGGCATCATCTGTGTTTTCAAACTCGACAAAGGCATACCCTTTCGGCCGGCCATTATTCTGTGGTATTCTGATAGCGACGGCTTTCTCAAACACGCTCTGCAGAGACTCCTCTGTGGCACTGAACGCTAGATTATTTACAACCAGAACCTTGTTTGCAGGTGCAGAAGCCGGTCCTTTGCCGCTCTGTCGGCTTTTGGCGCCTGTGAAGTCCACCATGATGGATCGGCCCTGAACATCTGAACCCTGCGTCTCCTCCAACATTTTCTCAGCGATTGCTTCCGTCTTGAATTCAATGTACGCAATTCCTCTGCTGGTGCCGTTGTGGCCGACGGGTATCCTGATATCCAGTGCTTGGTCAAAAATCTCCTTCAGCTCATCTGAGGTTATGGAGTATGGCAGATTTTTCACAAACAGAGTCCGGGCATCTCTCTCCTTTTTGCTTTCTTGAGAGTCCTCTTTACTTCTCGCTCGGTCCAGTTTGATCGGCTGACCCATAAACTTCTTCCCGTTGAGACCGAGGGCTTGCTGAAGCTCCTCTTCTGTGCCAAAGTCGACATAACCAAACTTCTTGGACCCTCCAAGACGGACATCCTGAATAACAAGGCCCTCTTTCTTGAAGAATTTGCCGATGCCTTCTTTAATTTCTTCAAAACTCTTATCTGAGTTCAGGTTACCCATAAACAAACTGACAACTTCTCCATCAGATTTGGCTTTTTTAGCCGGTGGTGTTTCTTTGTCCTTCTTTACGTCAGCCTTCCTCTTTCCTGGTGTTACAGGAGCAGCTTCCTCgtcctcttcatcatcctcttcatcgtcctcatcatcctcctcttcatcgtcctcatcctcctctcttCTTCAGATTCTTCCTTGGCCTTCTTCACTGCTGCTTTTTTGGCTGGTGCAGGTGTTGTGTccatttcctcttcctcctcttccgattcatcatcttcatcctcagaTTCCTCTTTAGCTGGAGCTGCTTTAGCAGCAGGTTTAGCAGGAGCTGCTTTTTTAGGAGGCGGAGCTTCCTCCTCTTCTGATTCATCATCATCatcgtcgtcgtcatcatcCTCATCAGACTCCTCCTTCTTTGCAGGAGCAGCTTTAGCCTTCACAGGTGTCGCTTTAGCAGGGGTGGCCTTGGCTGATTTAGCAGGGGTAGCCTTTTTGGGTGGTTCCTCCTCAGATTCttcatcatcgtcgtcatcctcatcatcctcgtCATCTGATTCTGCAGCAACAGCTGCTGCTTTCTTGGCAGGGGCTGCTTTAGCGGCTGGAGCTTTAGCCACTTTAGCTGGAGGAGCCTCTTCCTCTATTCGTCGTCGTCATCATCGTCTTCACTTTCTTGTTTGGCAGgagtttttccatttttcactgCCTTCGCTGGAGTTGCGTTCTTCTTGGCTGCAGCTTTGGGTGGTGGCGCCTCTTCTTCGTCATCTTCATCACTGTCCTCCTCACTGGACTCTTCGACTTCCTTTGGAGGTGGAGGAGCCTTTTTCTTCGGTGGTGCTTCCTTCACTTGTTTTTTCGACGCCTTCGCGAGTTTCACCATGGCTGGGCGGTGTTTCACTGAAACACGATAATAATGAGTTAAAACTAATCTTTTTTTACCGCAGCTCACTCACACGTGGTTCACTTCAGCAGCCTGGTGTGCACTCAGTTAGATAGTACAAGAGACGCTGCAGCACGGTGAAGCGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212640 lncRNA downstream 213419 11194437 ~ 11195673 (-) True G179727
TU212392 lncRNA downstream 713973 10605511 ~ 10695119 (-) False LOC113536673
TU212351 lncRNA downstream 829632 10578420 ~ 10579460 (-) True G179487
TU212349 lncRNA downstream 833060 10574536 ~ 10576032 (-) True G179485
TU212342 lncRNA downstream 845640 10561403 ~ 10563452 (-) True G179478
TU212763 lncRNA upstream 91053 11511099 ~ 11513673 (-) False LOC113536577
TU212764 lncRNA upstream 109577 11529623 ~ 11532033 (-) False LOC117598402
TU212779 lncRNA upstream 138873 11558919 ~ 11562343 (-) True G179827
TU212928 lncRNA upstream 308231 11728277 ~ 11777745 (-) True G179972
TU213015 lncRNA upstream 442943 11862989 ~ 11889149 (-) False fxr1
XM_026930736.2 mRNA downstream 162782 11243847 ~ 11246310 (-) True nppc
XM_034308792.1 mRNA downstream 171283 11196039 ~ 11237809 (-) False LOC113536755
XM_034308789.1 mRNA downstream 171283 11196039 ~ 11237809 (-) True LOC113536755
XM_034308788.1 mRNA downstream 171283 11199942 ~ 11237809 (-) False LOC113536755
XM_034308790.1 mRNA downstream 171283 11199943 ~ 11237809 (-) False LOC113536755
XM_026930518.2 mRNA upstream 8559 11428605 ~ 11475968 (-) False psmd1
XM_026930517.2 mRNA upstream 8559 11428605 ~ 11475968 (-) True psmd1
XM_026930677.2 mRNA upstream 58562 11478608 ~ 11481509 (-) True LOC113536618
XM_034308894.1 mRNA upstream 71661 11491707 ~ 11503922 (-) True LOC117598430
XM_034308573.1 mRNA upstream 90800 11510846 ~ 11518394 (-) True LOC113536577
TU212647 other downstream 162787 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 1593867 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 1885762 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 2518394 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 3161330 8247690 ~ 8247762 (-) True trnar-acg_8
TU212758 other upstream 76028 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 1297315 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 1816357 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 1819703 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 2940890 14360936 ~ 14361647 (-) False LOC113527598

Expression Profile