RNA id: TU213117


Basic Information

Item Value
RNA id TU213117
length 352
lncRNA type inter_gene
GC content 0.22
exon number 1
gene id G180132
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12062559 ~ 12062910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttctctttatttcagaTATAGAGCtcttatattacattacagcagaaaagtgcaaacatttcataataaCAAGGtacatgtacaaaaatattcagCATTCAGTTACATAATTTTCTCCTGCAAAGTTTCTGTATGCATTCAAAGCCTTTTGGTGAGTATAAGtcataaaacatacatttcatttatatgaGTTTAAGATATGAAacataatttgcatttttttaaaggtttttgtatggtttccctttcttcttttttaaactcttttttaattgcaaaatatgaaaaaaaatgttatattttattaattttttttaaaaatttaaatatttttttaaataatgataattt

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213107 lncRNA upstream 8947 12053272 ~ 12053612 (+) True G180122
XR_003403684.2 lncRNA upstream 9409 12045804 ~ 12053150 (+) True LOC113536506
XR_004579069.1 lncRNA upstream 25103 12032000 ~ 12037456 (+) True LOC117598401
XR_004579093.1 lncRNA upstream 234021 11826929 ~ 11828538 (+) True LOC117598421
TU212810 lncRNA upstream 362584 11699682 ~ 11699975 (+) True G179858
TU213141 lncRNA downstream 118105 12181015 ~ 12186970 (+) True G180144
TU213194 lncRNA downstream 329977 12392887 ~ 12393491 (+) True G180192
TU213207 lncRNA downstream 359792 12422702 ~ 12423152 (+) True G180205
TU213255 lncRNA downstream 423596 12486506 ~ 12486744 (+) True G180242
TU213262 lncRNA downstream 433821 12496731 ~ 12497651 (+) True G180246
XM_026930473.2 mRNA upstream 43059 11996456 ~ 12019500 (+) True cers1
XM_026930472.2 mRNA upstream 70443 11985422 ~ 11992116 (+) True kng1
XM_034308818.1 mRNA upstream 103856 11900396 ~ 11958703 (+) False atp11b
XM_034308512.1 mRNA downstream 10334 12073244 ~ 12135868 (+) True LOC113536486
XM_034308514.1 mRNA downstream 10334 12073244 ~ 12135868 (+) False LOC113536486
XM_034308517.1 mRNA downstream 10334 12073244 ~ 12135868 (+) False LOC113536486
XM_034308515.1 mRNA downstream 10334 12073244 ~ 12135868 (+) False LOC113536486
XM_034308518.1 mRNA downstream 10334 12073244 ~ 12135868 (+) False LOC113536486
TU213106 other upstream 6810 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 633220 11428613 ~ 11429339 (+) False G179758
XR_003403710.1 other upstream 644316 11418114 ~ 11418243 (+) True LOC113536800
XR_004579127.1 other upstream 649919 11412574 ~ 11412640 (+) True LOC117598448
XR_003403700.1 other upstream 650432 11412060 ~ 11412127 (+) True LOC113536790
TU213163 other downstream 265156 12328066 ~ 12333631 (+) False timm13
trnag-ucc_15 other downstream 325260 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213294 other downstream 510283 12573193 ~ 12602064 (+) False LOC117598398
TU213850 other downstream 1033463 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 1187460 13250370 ~ 13250441 (+) True trnag-gcc_9

Expression Profile